{ "type": "genome", "identifier": "GCA_020445665.1", "organism": "Rhodocyclaceae bacterium", "title": "Rhodocyclaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020445665.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564236", "wgs_master": "JAGRGD000000000.1", "refseq_category": "na", "taxid": "1898103", "species_taxid": "1898103", "organism_name": "Rhodocyclaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA167", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/13", "asm_name": "ASM2044566v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/445/665/GCA_020445665.1_ASM2044566v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-13", "dateModified": "2021-10-13", "datePublished": "2021-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodocyclaceae bacterium" ], "sample_taxid": [ "1898103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.324 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4794045", "Number of Sequences": "341", "Longest Sequences (bp)": "139079", "N50 (bp)": "33675", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "4231", "Average Protein Length": "317.3", "Coding Ratio (%)": "84.0", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 78.8354, "matched_fragments": 411, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 78.7514, "matched_fragments": 407, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera humireducens", "strain": "strain=SgZ-1", "accession": "GCA_001051995.2", "taxid": 1134435, "species_taxid": 1134435, "relation_to_type": "type", "validated": true, "ani": 78.6342, "matched_fragments": 410, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 78.5816, "matched_fragments": 412, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera propionica", "strain": "strain=KNDSS-Mac4", "accession": "GCA_002245655.1", "taxid": 2019431, "species_taxid": 2019431, "relation_to_type": "type", "validated": true, "ani": 78.5725, "matched_fragments": 405, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluvorans", "strain": "strain=Td21", "accession": "GCA_012910905.1", "taxid": 92002, "species_taxid": 92002, "relation_to_type": "type", "validated": true, "ani": 78.4536, "matched_fragments": 405, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 78.366, "matched_fragments": 428, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum evansii", "strain": "strain=KB740", "accession": "GCA_012910805.1", "taxid": 59406, "species_taxid": 59406, "relation_to_type": "type", "validated": true, "ani": 78.2898, "matched_fragments": 426, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 78.2322, "matched_fragments": 428, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 78.2129, "matched_fragments": 384, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 78.1828, "matched_fragments": 371, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=DSM 12121", "accession": "GCA_004361735.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 78.1559, "matched_fragments": 411, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=VB32", "accession": "GCA_012910835.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 78.095, "matched_fragments": 411, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluclasticum", "strain": "strain=MF63", "accession": "GCA_000378245.1", "taxid": 92003, "species_taxid": 92003, "relation_to_type": "type", "validated": true, "ani": 78.0822, "matched_fragments": 408, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum anaerobium", "strain": "strain=LuFRes1", "accession": "GCA_012910705.2", "taxid": 182180, "species_taxid": 182180, "relation_to_type": "type", "validated": true, "ani": 78.0546, "matched_fragments": 340, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_017894385.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 77.9813, "matched_fragments": 390, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter aestuarii", "strain": "strain=H1-1-2A", "accession": "GCA_017309585.1", "taxid": 2815343, "species_taxid": 2815343, "relation_to_type": "type", "validated": true, "ani": 77.8778, "matched_fragments": 334, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum buckelii", "strain": "strain=U120", "accession": "GCA_012910785.2", "taxid": 200254, "species_taxid": 200254, "relation_to_type": "type", "validated": true, "ani": 77.6926, "matched_fragments": 305, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 77.2554, "matched_fragments": 219, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_014197755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 77.2302, "matched_fragments": 223, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium piscinae", "strain": "strain=DSM 23278", "accession": "GCA_021129175.1", "taxid": 686831, "species_taxid": 686831, "relation_to_type": "type", "validated": true, "ani": 76.1618, "matched_fragments": 185, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Accumulibacter contiguus", "strain": "", "accession": "GCA_012940005.1", "taxid": 2954381, "species_taxid": 2954381, "relation_to_type": "type", "validated": true, "ani": 76.1405, "matched_fragments": 135, "total_fragments": 1415, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_008501585.1", "gtdb_species": "s__Denitromonas sp008501585", "ani": 79.0337, "matched_fragments": 457, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Denitromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014489115.1", "gtdb_species": "s__Thauera_A sp014489115", "ani": 78.9072, "matched_fragments": 474, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003963015.1", "gtdb_species": "s__Thauera sp003963015", "ani": 78.8395, "matched_fragments": 433, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000310225.1", "gtdb_species": "s__Thauera phenylacetica", "ani": 78.7866, "matched_fragments": 416, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591165.1", "gtdb_species": "s__Thauera butanivorans", "ani": 78.7402, "matched_fragments": 408, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002422685.1", "gtdb_species": "s__Thauera sp002422685", "ani": 78.5833, "matched_fragments": 379, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004801295.1", "gtdb_species": "s__Thauera_A nasutitermitis", "ani": 78.5627, "matched_fragments": 414, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003446655.1", "gtdb_species": "s__Thauera sp003446655", "ani": 78.5338, "matched_fragments": 312, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009469595.1", "gtdb_species": "s__Thauera sp009469595", "ani": 78.4415, "matched_fragments": 401, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016790365.1", "gtdb_species": "s__Thauera sp016790365", "ani": 78.4366, "matched_fragments": 308, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156155.1", "gtdb_species": "s__Aromatoleum tolulyticum", "ani": 78.3741, "matched_fragments": 427, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002354895.1", "gtdb_species": "s__Thauera sp002354895", "ani": 78.3499, "matched_fragments": 423, "total_fragments": 1415, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012911005.1", "gtdb_species": "s__Aromatoleum toluolicum", "ani": 78.2149, "matched_fragments": 430, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009800965.1", "gtdb_species": "s__Azoarcus_E halotolerans", "ani": 78.2019, "matched_fragments": 363, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azoarcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000310205.1", "gtdb_species": "s__Thauera linaloolentis", "ani": 78.1756, "matched_fragments": 374, "total_fragments": 1415, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014822185.1", "gtdb_species": "s__Aromatoleum sp014822185", "ani": 78.1632, "matched_fragments": 406, "total_fragments": 1415, "gtdb_taxonomy": 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