{
    "type": "genome",
    "identifier": "GCA_020445945.1",
    "organism": "Rhodocyclaceae bacterium",
    "title": "Rhodocyclaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020445945.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564223",
        "wgs_master": "JAGRFQ000000000.1",
        "refseq_category": "na",
        "taxid": "1898103",
        "species_taxid": "1898103",
        "organism_name": "Rhodocyclaceae bacterium",
        "infraspecific_name": "",
        "isolate": "HKST-UBA155",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/13",
        "asm_name": "ASM2044594v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/445/945/GCA_020445945.1_ASM2044594v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-13",
    "dateModified": "2021-10-13",
    "datePublished": "2021-10-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodocyclaceae bacterium"
        ],
        "sample_taxid": [
            "1898103"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "0.858 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 64.58,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3115112",
        "Number of Sequences": "114",
        "Longest Sequences (bp)": "151073",
        "N50 (bp)": "41191",
        "Gap Ratio (%)": "0.187409",
        "GCcontent (%)": "66.8",
        "Number of CDSs": "2823",
        "Average Protein Length": "321.2",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrogeniibacter mangrovi",
                "strain": "strain=M9-3-2",
                "accession": "GCA_010983895.1",
                "taxid": 2016596,
                "species_taxid": 2016596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.388,
                "matched_fragments": 640,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azoarcus nasutitermitis",
                "strain": "strain=CC-YHH838",
                "accession": "GCA_004801295.1",
                "taxid": 2565930,
                "species_taxid": 2565930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5962,
                "matched_fragments": 452,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera phenylacetica",
                "strain": "strain=B4P",
                "accession": "GCA_000310225.1",
                "taxid": 164400,
                "species_taxid": 164400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5268,
                "matched_fragments": 438,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrogeniibacter aestuarii",
                "strain": "strain=H1-1-2A",
                "accession": "GCA_017309585.1",
                "taxid": 2815343,
                "species_taxid": 2815343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4639,
                "matched_fragments": 500,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera aminoaromatica",
                "strain": "strain=S2",
                "accession": "GCA_000310185.1",
                "taxid": 164330,
                "species_taxid": 164330,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3887,
                "matched_fragments": 427,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azoarcus rhizosphaerae",
                "strain": "strain=CC-YHH848",
                "accession": "GCA_004801305.1",
                "taxid": 2565932,
                "species_taxid": 2565932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3066,
                "matched_fragments": 459,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera butanivorans",
                "strain": "strain=NBRC 103042",
                "accession": "GCA_001591165.1",
                "taxid": 86174,
                "species_taxid": 86174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1835,
                "matched_fragments": 426,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera linaloolentis",
                "strain": "strain=DSM 12138",
                "accession": "GCA_000621305.1",
                "taxid": 76112,
                "species_taxid": 76112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1785,
                "matched_fragments": 387,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera propionica",
                "strain": "strain=KNDSS-Mac4",
                "accession": "GCA_002245655.1",
                "taxid": 2019431,
                "species_taxid": 2019431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9749,
                "matched_fragments": 424,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera phenolivorans",
                "strain": "strain=ZV1C",
                "accession": "GCA_001696715.1",
                "taxid": 1792543,
                "species_taxid": 1792543,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9479,
                "matched_fragments": 422,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum toluolicum",
                "strain": "strain=T",
                "accession": "GCA_012911005.2",
                "taxid": 90060,
                "species_taxid": 90060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8451,
                "matched_fragments": 408,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum toluclasticum",
                "strain": "strain=MF63",
                "accession": "GCA_000378245.1",
                "taxid": 92003,
                "species_taxid": 92003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7803,
                "matched_fragments": 402,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum aromaticum",
                "strain": "strain=EbN1",
                "accession": "GCA_000025965.1",
                "taxid": 551760,
                "species_taxid": 551760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5479,
                "matched_fragments": 310,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum petrolei",
                "strain": "strain=ToN1",
                "accession": "GCA_012910985.1",
                "taxid": 76116,
                "species_taxid": 76116,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5101,
                "matched_fragments": 377,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum anaerobium",
                "strain": "strain=LuFRes1",
                "accession": "GCA_012910705.2",
                "taxid": 182180,
                "species_taxid": 182180,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4947,
                "matched_fragments": 365,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum petrolei",
                "strain": "strain=ToN1",
                "accession": "GCA_017894385.1",
                "taxid": 76116,
                "species_taxid": 76116,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4881,
                "matched_fragments": 389,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum buckelii",
                "strain": "strain=U120",
                "accession": "GCA_012910785.2",
                "taxid": 200254,
                "species_taxid": 200254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2385,
                "matched_fragments": 328,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia oxyphila",
                "strain": "strain=NBRC 105797",
                "accession": "GCA_000685075.1",
                "taxid": 614212,
                "species_taxid": 614212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1446,
                "matched_fragments": 221,
                "total_fragments": 985,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 64.58,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_008501585.1",
                "gtdb_species": "s__Denitromonas sp008501585",
                "ani": 83.0103,
                "matched_fragments": 719,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Denitromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018524365.1",
                "gtdb_species": "s__Denitromonas sp018524365",
                "ani": 82.6299,
                "matched_fragments": 696,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Denitromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007625205.1",
                "gtdb_species": "s__Denitromonas halophilus",
                "ani": 81.7176,
                "matched_fragments": 669,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Denitromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.77",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_010983895.1",
                "gtdb_species": "s__Denitromonas sp010983895",
                "ani": 81.3532,
                "matched_fragments": 644,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Denitromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007625155.1",
                "gtdb_species": "s__Denitromonas halophilus_A",
                "ani": 81.291,
                "matched_fragments": 645,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Denitromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014489115.1",
                "gtdb_species": "s__Thauera_A sp014489115",
                "ani": 80.0647,
                "matched_fragments": 488,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004801295.1",
                "gtdb_species": "s__Thauera_A nasutitermitis",
                "ani": 79.5854,
                "matched_fragments": 453,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003034845.1",
                "gtdb_species": "s__Thauera_A sp003034845",
                "ani": 79.3982,
                "matched_fragments": 450,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000310185.1",
                "gtdb_species": "s__Thauera aminoaromatica",
                "ani": 79.3689,
                "matched_fragments": 428,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_012910705.1",
                "gtdb_species": "s__Aromatoleum anaerobium",
                "ani": 78.5233,
                "matched_fragments": 364,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000025965.1",
                "gtdb_species": "s__Aromatoleum aromaticum",
                "ani": 78.5089,
                "matched_fragments": 313,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017894385.1",
                "gtdb_species": "s__Aromatoleum petrolei",
                "ani": 78.4671,
                "matched_fragments": 391,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001274695.1",
                "gtdb_species": "s__Aromatoleum sp001274695",
                "ani": 78.2943,
                "matched_fragments": 353,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012910785.1",
                "gtdb_species": "s__Aromatoleum buckelii",
                "ani": 78.1812,
                "matched_fragments": 349,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003063315.1",
                "gtdb_species": "s__Limnohabitans_A sp003063315",
                "ani": 76.2047,
                "matched_fragments": 76,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001269345.1",
                "gtdb_species": "s__Limnohabitans_A sp001269345",
                "ani": 76.1179,
                "matched_fragments": 59,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903897925.1",
                "gtdb_species": "s__Rhodoferax sp903897925",
                "ani": 75.9137,
                "matched_fragments": 99,
                "total_fragments": 985,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.312,
        "cell_length": 0.097,
        "doubling_h": null,
        "growth_tmp": 30.687,
        "optimum_tmp": 32.625,
        "optimum_ph": 7.0,
        "genome_size": 3192380.0,
        "gc_content": 63.8,
        "coding_genes": 2918.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 53.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.285,
        "anaerobic_respiration": 0.285,
        "aerobic_respiration": 0.428,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.75,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.25,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Rhodocyclaceae",
        "g__Nitrogeniibacter",
        "s__Nitrogeniibacter sp020445945"
    ],
    "_genome_taxon": [
        "Rhodocyclaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Rhodocyclaceae",
        "g__Nitrogeniibacter",
        "s__Nitrogeniibacter sp020445945",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Rhodocyclaceae",
        "Nitrogeniibacter",
        "Nitrogeniibacter",
        "sp020445945"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}