{
    "type": "genome",
    "identifier": "GCA_020446045.1",
    "organism": "Nitrosomonas sp.",
    "title": "Nitrosomonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020446045.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564219",
        "wgs_master": "JAGRFM000000000.1",
        "refseq_category": "na",
        "taxid": "42353",
        "species_taxid": "42353",
        "organism_name": "Nitrosomonas sp.",
        "infraspecific_name": "",
        "isolate": "HKST-UBA151",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/13",
        "asm_name": "ASM2044604v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/446/045/GCA_020446045.1_ASM2044604v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-13",
    "dateModified": "2021-10-13",
    "datePublished": "2021-10-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosomonas sp."
        ],
        "sample_taxid": [
            "42353"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "1.025 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3572857",
        "Number of Sequences": "242",
        "Longest Sequences (bp)": "81329",
        "N50 (bp)": "23919",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "3029",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nitrosomonas nitrosa",
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                "species_taxid": 52442,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1066,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas marina",
                "strain": "strain=Nm22",
                "accession": "GCA_900110145.1",
                "taxid": 917,
                "species_taxid": 917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8859,
                "matched_fragments": 172,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas aestuarii",
                "strain": "strain=Nm36",
                "accession": "GCA_003046585.1",
                "taxid": 52441,
                "species_taxid": 52441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3413,
                "matched_fragments": 167,
                "total_fragments": 1066,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas ureae",
                "strain": "strain=Nm10",
                "accession": "GCA_900105875.1",
                "taxid": 44577,
                "species_taxid": 44577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.595,
                "matched_fragments": 68,
                "total_fragments": 1066,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas ureae",
                "strain": "strain=Nm10",
                "accession": "GCA_001455205.1",
                "taxid": 44577,
                "species_taxid": 44577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5572,
                "matched_fragments": 69,
                "total_fragments": 1066,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.17,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_900110145.1",
                "gtdb_species": "s__Nitrosomonas marina",
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                "total_fragments": 1066,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016721865.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111165.1",
                "gtdb_species": "s__Nitrosomonas sp900111165",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111605.1",
                "gtdb_species": "s__Nitrosomonas marina_A",
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                "total_fragments": 1066,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003046585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
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                "mean_intra_species_ani": "97.25",
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            },
            {
                "accession": "GCA_003514765.1",
                "gtdb_species": "s__Nitrosomonas sp003514765",
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                "matched_fragments": 108,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "matched_fragments": 85,
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.016,
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        "bacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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    "_genome_taxon": [
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        "c__Gammaproteobacteria",
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        "g__Nitrosomonas",
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        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Nitrosomonadaceae",
        "Nitrosomonas",
        "Nitrosomonas",
        "sp020446045"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}