{ "type": "genome", "identifier": "GCA_020446285.1", "organism": "Geminicoccaceae bacterium", "title": "Geminicoccaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020446285.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564206", "wgs_master": "JAGREZ000000000.1", "refseq_category": "na", "taxid": "2448052", "species_taxid": "2448052", "organism_name": "Geminicoccaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA14", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/13", "asm_name": "ASM2044628v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/446/285/GCA_020446285.1_ASM2044628v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-13", "dateModified": "2021-10-13", "datePublished": "2021-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Geminicoccaceae bacterium" ], "sample_taxid": [ "2448052" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "1.163 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.27, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4204192", "Number of Sequences": "619", "Longest Sequences (bp)": "43242", "N50 (bp)": "9687", "Gap Ratio (%)": "0.918964", "GCcontent (%)": "63.7", "Number of CDSs": "3406", "Average Protein Length": "302.1", "Coding Ratio (%)": "73.4", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 75.6996, "matched_fragments": 145, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Luteovulum] sphaeroides subsp. megalophilum", "strain": "strain=DSM 18937", "accession": "GCA_900188265.1", "taxid": 418630, "species_taxid": 1063, "relation_to_type": "type", "validated": true, "ani": 75.6213, "matched_fragments": 87, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 75.5375, "matched_fragments": 108, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 75.5318, "matched_fragments": 141, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 75.497, "matched_fragments": 132, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elioraea tepida", "strain": "strain=MS-P2", "accession": "GCA_019203965.1", "taxid": 2843330, "species_taxid": 2843330, "relation_to_type": "type", "validated": true, "ani": 75.475, "matched_fragments": 81, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus macauensis", "strain": "strain=DSM 101730", "accession": "GCA_014201905.1", "taxid": 57001, "species_taxid": 57001, "relation_to_type": "type", "validated": true, "ani": 75.4353, "matched_fragments": 90, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=JCM 31718", "accession": "GCA_004793685.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 75.3488, "matched_fragments": 68, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=RMAR8-3", "accession": "GCA_017161425.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 75.3261, "matched_fragments": 70, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 75.3195, "matched_fragments": 103, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=DSM 133", "accession": "GCA_001548155.2", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 75.3121, "matched_fragments": 72, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 75.2994, "matched_fragments": 73, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=DSM 103570", "accession": "GCA_014196845.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 75.2957, "matched_fragments": 106, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 75.2886, "matched_fragments": 67, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus sediminis", "strain": "strain=PTG4-2", "accession": "GCA_003258595.1", "taxid": 2184697, "species_taxid": 2184697, "relation_to_type": "type", "validated": true, "ani": 75.288, "matched_fragments": 122, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter nectariphilus", "strain": "strain=DSM 15620", "accession": "GCA_000429765.1", "taxid": 220343, "species_taxid": 220343, "relation_to_type": "type", "validated": true, "ani": 75.2064, "matched_fragments": 58, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas oryzae", "strain": "strain=DSM 16300", "accession": "GCA_000422965.1", "taxid": 261934, "species_taxid": 261934, "relation_to_type": "type", "validated": true, "ani": 75.1363, "matched_fragments": 68, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrospirillum iridis", "strain": "strain=DSM 22198", "accession": "GCA_014205765.1", "taxid": 765888, "species_taxid": 765888, "relation_to_type": "type", "validated": true, "ani": 75.1345, "matched_fragments": 72, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 75.106, "matched_fragments": 127, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 75.0377, "matched_fragments": 109, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 75.0329, "matched_fragments": 54, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=DSM 18781", "accession": "GCA_004152845.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 75.0216, "matched_fragments": 55, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas metalli", "strain": "strain=CGMCC 1.15330", "accession": "GCA_014641735.1", "taxid": 1779358, "species_taxid": 1779358, "relation_to_type": "type", "validated": true, "ani": 74.963, "matched_fragments": 67, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 74.9171, "matched_fragments": 65, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas phyllosphaerae", "strain": "strain=FA2", "accession": "GCA_000427645.1", "taxid": 257003, "species_taxid": 257003, "relation_to_type": "type", "validated": true, "ani": 74.8395, "matched_fragments": 52, "total_fragments": 1073, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 85.27, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_007131045.1", "gtdb_species": "s__SLRI01 sp007131045", "ani": 76.4519, "matched_fragments": 164, "total_fragments": 1073, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__SLRI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011390475.1", "gtdb_species": "s__SLRI01 sp011390475", "ani": 76.3592, "matched_fragments": 180, "total_fragments": 1073, "gtdb_taxonomy": 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