{
    "type": "genome",
    "identifier": "GCA_020446345.1",
    "organism": "Ottowia sp.",
    "title": "Ottowia sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "The University Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020446345.1",
        "bioproject": "PRJNA432264",
        "biosample": "SAMN14564203",
        "wgs_master": "JAGREW000000000.1",
        "refseq_category": "na",
        "taxid": "1898956",
        "species_taxid": "1898956",
        "organism_name": "Ottowia sp.",
        "infraspecific_name": "",
        "isolate": "HKST-UBA137",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/13",
        "asm_name": "ASM2044634v1",
        "submitter": "The University Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/446/345/GCA_020446345.1_ASM2044634v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-13",
    "dateModified": "2021-10-13",
    "datePublished": "2021-10-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ottowia sp."
        ],
        "sample_taxid": [
            "1898956"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong SAR, Shatin waste water treatment plant"
        ],
        "sample_host_location_id": [],
        "data_size": "0.867 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 41.29,
        "contamination": 4.92,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3220782",
        "Number of Sequences": "1623",
        "Longest Sequences (bp)": "18767",
        "N50 (bp)": "2072",
        "Gap Ratio (%)": "3.997570",
        "GCcontent (%)": "68.8",
        "Number of CDSs": "1691",
        "Average Protein Length": "233.5",
        "Coding Ratio (%)": "36.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Ottowia beijingensis",
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                "accession": "GCA_013423955.1",
                "taxid": 1207057,
                "species_taxid": 1207057,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 135,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ottowia testudinis",
                "strain": "strain=27C",
                "accession": "GCA_017498525.1",
                "taxid": 2816950,
                "species_taxid": 2816950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5913,
                "matched_fragments": 113,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ottowia oryzae",
                "strain": "strain=KADR8-3",
                "accession": "GCA_003008535.1",
                "taxid": 2109914,
                "species_taxid": 2109914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.191,
                "matched_fragments": 103,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter tataouinensis",
                "strain": "strain=TTB310",
                "accession": "GCA_000215705.1",
                "taxid": 94132,
                "species_taxid": 94132,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5524,
                "matched_fragments": 100,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter henchirensis",
                "strain": "strain=DSM 14656",
                "accession": "GCA_004682015.1",
                "taxid": 204072,
                "species_taxid": 204072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1481,
                "matched_fragments": 81,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
                "taxid": 80869,
                "species_taxid": 80869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1083,
                "matched_fragments": 80,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga flava",
                "strain": "strain=NBRC 102514",
                "accession": "GCA_001571145.1",
                "taxid": 65657,
                "species_taxid": 65657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0446,
                "matched_fragments": 96,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas terrae",
                "strain": "strain=NBRC 106524",
                "accession": "GCA_001544075.1",
                "taxid": 673548,
                "species_taxid": 673548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6239,
                "matched_fragments": 89,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter algicola",
                "strain": "strain=CrO1",
                "accession": "GCA_016641735.1",
                "taxid": 2795217,
                "species_taxid": 2795217,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3627,
                "matched_fragments": 96,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas terrigena",
                "strain": "strain=NCTC1937",
                "accession": "GCA_900461435.1",
                "taxid": 32013,
                "species_taxid": 32013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8122,
                "matched_fragments": 78,
                "total_fragments": 262,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 41.29,
            "contamination": 4.92,
            "strain_heterogeneity": 66.67
        },
        "gtdb_result": [
            {
                "accession": "GCA_013423955.1",
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                "matched_fragments": 133,
                "total_fragments": 262,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016702555.1",
                "gtdb_species": "s__Ottowia sp016702555",
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                "matched_fragments": 108,
                "total_fragments": 262,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.62",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017307865.1",
                "gtdb_species": "s__Ottowia sp017307865",
                "ani": 82.1246,
                "matched_fragments": 134,
                "total_fragments": 262,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_016703145.1",
                "gtdb_species": "s__Ottowia sp016703145",
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                "matched_fragments": 132,
                "total_fragments": 262,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001897615.1",
                "gtdb_species": "s__Ottowia sp001897615",
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                "matched_fragments": 136,
                "total_fragments": 262,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia",
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                "min_intra_species_ani": "96.20",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008017535.1",
                "gtdb_species": "s__Ottowia sp008017535",
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                "matched_fragments": 103,
                "total_fragments": 262,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017498525.1",
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                "matched_fragments": 113,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ottowia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018241405.1",
                "gtdb_species": "s__Alicycliphilus sp018241405",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002127215.1",
                "gtdb_species": "s__Hydrogenophaga sp002127215",
                "ani": 78.2455,
                "matched_fragments": 96,
                "total_fragments": 262,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.477,
        "doubling_h": null,
        "growth_tmp": 27.0,
        "optimum_tmp": 26.0,
        "optimum_ph": 7.3,
        "genome_size": 7048723.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Burkholderiaceae",
        "g__Ottowia",
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    ],
    "_genome_taxon": [
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        "sp.",
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        "p__Pseudomonadota",
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        "o__Burkholderiales",
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        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Ottowia",
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        "sp024235955"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}