{ "type": "genome", "identifier": "GCA_020447075.1", "organism": "Paracoccaceae bacterium", "title": "Paracoccaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020447075.1", "bioproject": "PRJNA432264", "biosample": "SAMN14564167", "wgs_master": "JAGRDM000000000.1", "refseq_category": "na", "taxid": "1904441", "species_taxid": "1904441", "organism_name": "Paracoccaceae bacterium", "infraspecific_name": "", "isolate": "HKST-UBA104", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/13", "asm_name": "ASM2044707v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/447/075/GCA_020447075.1_ASM2044707v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-13", "dateModified": "2021-10-13", "datePublished": "2021-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccaceae bacterium" ], "sample_taxid": [ "1904441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hong Kong SAR, Shatin waste water treatment plant" ], "sample_host_location_id": [], "data_size": "0.905 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.97, "contamination": 4.69, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3369666", "Number of Sequences": "695", "Longest Sequences (bp)": "33601", "N50 (bp)": "6688", "Gap Ratio (%)": "4.486439", "GCcontent (%)": "66.0", "Number of CDSs": "2609", "Average Protein Length": "262.2", "Coding Ratio (%)": "60.9", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Defluviimonas aquaemixtae", "strain": "strain=CECT 8626", "accession": "GCA_900302475.1", "taxid": 1542388, "species_taxid": 1542388, "relation_to_type": "type", "validated": true, "ani": 78.3792, "matched_fragments": 339, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=DSM 18714", "accession": "GCA_900156695.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.2861, "matched_fragments": 273, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.2617, "matched_fragments": 276, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter huangdaonensis", "strain": "strain=CGMCC 1.12963", "accession": "GCA_004022465.1", "taxid": 2501515, "species_taxid": 2501515, "relation_to_type": "type", "validated": true, "ani": 78.0917, "matched_fragments": 304, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albidovulum inexpectatum", "strain": "strain=DSM 12048", "accession": "GCA_002927635.1", "taxid": 196587, "species_taxid": 196587, "relation_to_type": "type", "validated": true, "ani": 78.0588, "matched_fragments": 241, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, "relation_to_type": "type", "validated": true, "ani": 78.0039, "matched_fragments": 313, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.9147, "matched_fragments": 264, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 77.9017, "matched_fragments": 327, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", 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