{ "type": "genome", "identifier": "GCA_020528935.1", "organism": "Saprospiraceae bacterium", "title": "Saprospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Federal University of Rio de Janeiro", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020528935.1", "bioproject": "PRJNA675017", "biosample": "SAMN16710317", "wgs_master": "JAJDFU000000000.1", "refseq_category": "na", "taxid": "2202734", "species_taxid": "2202734", "organism_name": "Saprospiraceae bacterium", "infraspecific_name": "", "isolate": "HLSAbin9", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/19", "asm_name": "ASM2052893v1", "submitter": "Federal University of Rio de Janeiro", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/528/935/GCA_020528935.1_ASM2052893v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-19", "dateModified": "2021-10-19", "datePublished": "2021-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Saprospiraceae bacterium" ], "sample_taxid": [ "2202734" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Araruama, hypersaline lagoon system" ], "sample_host_location_id": [], "data_size": "1.081 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3753274", "Number of 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litorea", "strain": "strain=HSMS-39", "accession": "GCA_004803465.1", "taxid": 2562452, "species_taxid": 2562452, "relation_to_type": "type", "validated": true, "ani": 75.9238, "matched_fragments": 53, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella maritima", "strain": "strain=CECT 8419, type strain", "accession": "GCA_923081025.1", "taxid": 1383882, "species_taxid": 1383882, "relation_to_type": "type", "validated": true, "ani": 75.7647, "matched_fragments": 52, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_015490175.1", "gtdb_species": "s__WFYJ01 sp015490175", "ani": 76.3551, "matched_fragments": 101, "total_fragments": 885, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__WFYJ01", "ani_circumscription_radius": 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"N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003390915.1", "gtdb_species": "s__Lewinella_A sp003390915", "ani": 75.8945, "matched_fragments": 67, "total_fragments": 885, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013360405.1", "gtdb_species": "s__JABWBR01 sp013360405", "ani": 75.7639, "matched_fragments": 57, "total_fragments": 885, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JABWBR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.125, "cell_length": 0.653, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 29.062, "optimum_ph": 7.0, "genome_size": 4430689.167, "gc_content": 46.251, "coding_genes": 3955.333, "rRNA16S_genes": 3.0, "tRNA_genes": 48.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.5 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Saprospiraceae", "g__JAJDFU01", "s__JAJDFU01 sp020528935" ], "_genome_taxon": [ "Saprospiraceae", "bacterium", "d__Bacteria", 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