{
    "type": "genome",
    "identifier": "GCA_020626585.1",
    "organism": "bacterium",
    "title": "bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "zhejiang university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020626585.1",
        "bioproject": "PRJNA730102",
        "biosample": "SAMN19217725",
        "wgs_master": "JAHKZN000000000.1",
        "refseq_category": "na",
        "taxid": "1869227",
        "species_taxid": "1869227",
        "organism_name": "bacterium",
        "infraspecific_name": "",
        "isolate": "bin490_3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/26",
        "asm_name": "ASM2062658v1",
        "submitter": "zhejiang university",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/626/585/GCA_020626585.1_ASM2062658v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-26",
    "dateModified": "2021-10-26",
    "datePublished": "2021-10-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "bacterium"
        ],
        "sample_taxid": [
            "1869227"
        ],
        "sample_host_organism": [
            "cow"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hangzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.591 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.12,
        "contamination": 23.54,
        "strain_heterogeneity": 64.71,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2080999",
        "Number of Sequences": "553",
        "Longest Sequences (bp)": "22277",
        "N50 (bp)": "4709",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.5",
        "Number of CDSs": "1689",
        "Average Protein Length": "247.8",
        "Coding Ratio (%)": "60.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanobrevibacter gottschalkii",
                "strain": "strain=DSM 11977",
                "accession": "GCA_003814835.1",
                "taxid": 190974,
                "species_taxid": 190974,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 231,
                "total_fragments": 382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanobrevibacter oralis",
                "strain": "strain=DSM 7256",
                "accession": "GCA_001639275.1",
                "taxid": 66851,
                "species_taxid": 66851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7732,
                "matched_fragments": 138,
                "total_fragments": 382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanobrevibacter smithii",
                "strain": "strain=ATCC 35061; PS; DSMZ 861",
                "accession": "GCA_000016525.1",
                "taxid": 2173,
                "species_taxid": 2173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6091,
                "matched_fragments": 140,
                "total_fragments": 382,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.12,
            "contamination": 23.54,
            "strain_heterogeneity": 64.71
        },
        "gtdb_result": [
            {
                "accession": "GCA_902770715.1",
                "gtdb_species": "s__Methanobrevibacter_A sp902770715",
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                "matched_fragments": 235,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.49",
                "min_intra_species_ani": "97.18",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017434525.1",
                "gtdb_species": "s__Methanobrevibacter_A sp017434525",
                "ani": 81.839,
                "matched_fragments": 234,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904501935.1",
                "gtdb_species": "s__Methanobrevibacter_A sp904501935",
                "ani": 81.614,
                "matched_fragments": 197,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017459665.1",
                "gtdb_species": "s__Methanobrevibacter_A sp017459665",
                "ani": 81.6026,
                "matched_fragments": 204,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017427765.1",
                "gtdb_species": "s__Methanobrevibacter_A sp017427765",
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                "matched_fragments": 258,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017431965.1",
                "gtdb_species": "s__Methanobrevibacter_A sp017431965",
                "ani": 80.9212,
                "matched_fragments": 225,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900769095.1",
                "gtdb_species": "s__Methanobrevibacter_A sp900769095",
                "ani": 80.6693,
                "matched_fragments": 161,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003814835.1",
                "gtdb_species": "s__Methanobrevibacter_A gottschalkii",
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                "matched_fragments": 231,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "98.93",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902771225.1",
                "gtdb_species": "s__Methanobrevibacter_A sp900319535",
                "ani": 79.7174,
                "matched_fragments": 166,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A",
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                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "97.61",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.64",
                "num_clustered_genomes": 15,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Methanobacteriota",
        "c__Methanobacteria",
        "o__Methanobacteriales",
        "f__Methanobacteriaceae",
        "g__Methanobrevibacter_A",
        "s__"
    ],
    "_genome_taxon": [
        "bacterium",
        "d__Archaea",
        "p__Methanobacteriota",
        "c__Methanobacteria",
        "o__Methanobacteriales",
        "f__Methanobacteriaceae",
        "g__Methanobrevibacter_A",
        "s__",
        "Archaea",
        "Methanobacteriota",
        "Methanobacteria",
        "Methanobacteriales",
        "Methanobacteriaceae",
        "Methanobrevibacter",
        "A",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}