{ "type": "genome", "identifier": "GCA_020628185.1", "organism": "Pseudoalteromonas marina", "title": "Pseudoalteromonas marina", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020628185.1", "bioproject": "PRJNA726403", "biosample": "SAMN19030376", "wgs_master": "JAHDFL000000000.1", "refseq_category": "na", "taxid": "267375", "species_taxid": "267375", "organism_name": "Pseudoalteromonas marina", "infraspecific_name": "", "isolate": "MAG-21", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2062818v1", "submitter": "Ocean University of China", "gbrs_paired_asm": "GCF_020628185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/628/185/GCA_020628185.1_ASM2062818v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas marina" ], "sample_taxid": [ "267375" ], "sample_host_organism": [ "Neoporphyra haitanensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Rizhao City and Ningde City" ], "sample_host_location_id": [], "data_size": "1.171 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4112931", "Number of Sequences": "136", "Longest Sequences (bp)": "154532", "N50 (bp)": "52572", "Gap Ratio (%)": "0.101631", "GCcontent (%)": "39.5", "Number of CDSs": "3586", "Average Protein Length": "330.6", "Coding Ratio (%)": "86.5", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas marina", "strain": "strain=DSM 17587", "accession": "GCA_000238335.4", "taxid": 267375, "species_taxid": 267375, "relation_to_type": "type", "validated": true, "ani": 97.9226, "matched_fragments": 1156, "total_fragments": 1305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=ATCC 43555", "accession": "GCA_900239935.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 84.0262, "matched_fragments": 894, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas 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"accession": "GCA_000690055.1", "taxid": 1872678, "species_taxid": 1872678, "relation_to_type": "type", "validated": true, "ani": 82.7171, "matched_fragments": 828, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 82.6871, "matched_fragments": 884, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1138, "matched_fragments": 667, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1054, "matched_fragments": 689, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0516, "matched_fragments": 704, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KCTC 12958", "accession": "GCA_001455325.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0154, "matched_fragments": 711, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=KCTC 62131", "accession": "GCA_023283695.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 76.2631, "matched_fragments": 51, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium phosphoreum", "strain": "strain=ATCC 11040", "accession": "GCA_000949955.1", "taxid": 659, "species_taxid": 659, "relation_to_type": "type", "validated": true, "ani": 76.0353, "matched_fragments": 52, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 75.9127, "matched_fragments": 60, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000238335.3", 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