{ "type": "genome", "identifier": "GCA_020628635.1", "organism": "Hellea sp.", "title": "Hellea sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020628635.1", "bioproject": "PRJNA726403", "biosample": "SAMN19030359", "wgs_master": "JAHDEU000000000.1", "refseq_category": "na", "taxid": "2715692", "species_taxid": "2715692", "organism_name": "Hellea sp.", "infraspecific_name": "", "isolate": "MAG-189", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2062863v1", "submitter": "Ocean University of China", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/628/635/GCA_020628635.1_ASM2062863v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Hellea sp." ], "sample_taxid": [ "2715692" ], "sample_host_organism": [ "Neoporphyra haitanensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Rizhao City and Ningde City" ], "sample_host_location_id": [], "data_size": "0.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2337566", "Number of Sequences": "372", "Longest Sequences (bp)": "35677", "N50 (bp)": "7231", "Gap Ratio (%)": "0.140360", "GCcontent (%)": "65.8", "Number of CDSs": "1912", "Average Protein Length": "306.8", "Coding Ratio (%)": "75.3", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinicauda algicola", "strain": "strain=JCM 31718", "accession": "GCA_004793685.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 76.1282, "matched_fragments": 62, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=RMAR8-3", "accession": "GCA_017161425.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 76.1143, "matched_fragments": 64, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algimonas arctica", "strain": "strain=KCTC 32513", "accession": "GCA_014652695.1", "taxid": 1479486, "species_taxid": 1479486, "relation_to_type": "type", "validated": true, "ani": 76.0432, "matched_fragments": 53, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 75.9523, "matched_fragments": 73, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 75.6852, "matched_fragments": 69, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 75.2569, "matched_fragments": 65, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 75.2504, "matched_fragments": 73, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas corticis", "strain": "strain=36D10-4-7", "accession": "GCA_012035195.1", "taxid": 2722791, "species_taxid": 2722791, "relation_to_type": "type", "validated": true, "ani": 75.1531, "matched_fragments": 57, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017161425.1", "gtdb_species": "s__Marinicauda algicola", "ani": 76.1143, "matched_fragments": 64, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Marinicauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014652695.1", "gtdb_species": "s__Litorimonas arctica", "ani": 76.0432, "matched_fragments": 53, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Litorimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003122085.1", "gtdb_species": "s__WD6-1 sp003122085", "ani": 75.9403, "matched_fragments": 72, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__WD6-1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018241995.1", "gtdb_species": "s__17J80-11 sp018241995", "ani": 75.8542, "matched_fragments": 56, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__17J80-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007050995.1", "gtdb_species": "s__Glycocaulis profundi", "ani": 75.6256, "matched_fragments": 79, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Glycocaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003248805.1", "gtdb_species": "s__Bosea sp003248805", "ani": 75.4184, "matched_fragments": 68, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008728835.1", "gtdb_species": "s__Hypericibacter adhaerens", "ani": 75.3473, "matched_fragments": 54, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__Hypericibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012035195.1", "gtdb_species": "s__Sphingomonas sp012035195", "ani": 75.1531, "matched_fragments": 57, "total_fragments": 601, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.553, "cell_length": 0.431, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 3208823.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Caulobacterales", "f__Maricaulaceae", "g__Litorimonas", "s__Litorimonas sp020628635" ], "_genome_taxon": [ "Hellea", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Caulobacterales", "f__Maricaulaceae", "g__Litorimonas", "s__Litorimonas sp020628635", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Caulobacterales", "Maricaulaceae", "Litorimonas", "Litorimonas", "sp020628635" ], "_meo": [ { "id": "MEO_0000023", "label": "sea" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }