{ "type": "genome", "identifier": "GCA_020629175.1", "organism": "Flavimaricola sp.", "title": "Flavimaricola sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020629175.1", "bioproject": "PRJNA726403", "biosample": "SAMN19030333", "wgs_master": "JAHDDU000000000.1", "refseq_category": "na", "taxid": "2211662", "species_taxid": "2211662", "organism_name": "Flavimaricola sp.", "infraspecific_name": "", "isolate": "MAG-165", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2062917v1", "submitter": "Ocean University of China", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/629/175/GCA_020629175.1_ASM2062917v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavimaricola sp." ], "sample_taxid": [ "2211662" ], "sample_host_organism": [ "Neoporphyra haitanensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Rizhao City and Ningde City" ], "sample_host_location_id": [], "data_size": "0.891 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.93, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3137858", "Number of Sequences": "85", "Longest Sequences (bp)": "202008", "N50 (bp)": "63110", "Gap Ratio (%)": "0.197587", "GCcontent (%)": "59.3", "Number of CDSs": "3053", "Average Protein Length": "308.8", "Coding Ratio (%)": "90.1", "Number of rRNAs": "1", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cognatiyoonia koreensis", "strain": "strain=DSM 17925", "accession": "GCA_900109295.1", "taxid": 364200, "species_taxid": 364200, "relation_to_type": "type", "validated": true, "ani": 77.3492, "matched_fragments": 152, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimaricola marinus", "strain": "strain=CECT 8899", "accession": "GCA_900184895.1", "taxid": 1819565, "species_taxid": 1819565, "relation_to_type": "type", "validated": true, "ani": 77.3376, "matched_fragments": 233, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia litorea", "strain": "strain=DSM 29433", "accession": "GCA_900114675.1", "taxid": 1123755, "species_taxid": 1123755, "relation_to_type": "type", "validated": true, "ani": 77.1883, "matched_fragments": 154, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia rosea", "strain": "strain=DSM 29591", "accession": "GCA_900156505.1", "taxid": 287098, "species_taxid": 287098, "relation_to_type": "type", "validated": true, "ani": 77.1472, "matched_fragments": 184, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 77.0878, "matched_fragments": 192, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 76.9202, "matched_fragments": 129, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia vestfoldensis", "strain": "strain=DSM 16212", "accession": "GCA_000382265.1", "taxid": 245188, "species_taxid": 245188, "relation_to_type": "type", "validated": true, "ani": 76.8826, "matched_fragments": 198, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 76.8653, "matched_fragments": 142, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_008124775.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 76.8216, "matched_fragments": 127, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nitratireducens", "strain": "strain=TFZ", "accession": "GCA_002925845.1", "taxid": 2044597, "species_taxid": 2044597, "relation_to_type": "type", "validated": true, "ani": 76.8109, "matched_fragments": 126, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_000152805.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 76.8014, "matched_fragments": 128, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella atrilutea", "strain": "strain=DSM 29326", "accession": "GCA_900128995.1", "taxid": 366533, "species_taxid": 366533, "relation_to_type": "type", "validated": true, "ani": 76.7823, "matched_fragments": 176, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 76.7539, "matched_fragments": 176, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 76.7507, "matched_fragments": 188, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 76.712, "matched_fragments": 190, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria halocynthiae", "strain": "strain=DSM 27839", "accession": "GCA_900106805.1", "taxid": 985054, "species_taxid": 985054, "relation_to_type": "type", "validated": true, "ani": 76.7106, "matched_fragments": 110, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qingshengfaniella alkalisoli", "strain": "strain=LN3S51", "accession": "GCA_007855645.1", "taxid": 2599296, "species_taxid": 2599296, "relation_to_type": "type", "validated": true, "ani": 76.6955, "matched_fragments": 81, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 76.6732, "matched_fragments": 151, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera daeponensis", "strain": "strain=DSM 23529", "accession": "GCA_000473145.1", "taxid": 405746, "species_taxid": 405746, "relation_to_type": "type", "validated": true, "ani": 76.668, "matched_fragments": 160, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 76.6121, "matched_fragments": 148, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola variabilis", "strain": "strain=CECT 8572", "accession": "GCA_014195545.1", "taxid": 1492771, "species_taxid": 1492771, "relation_to_type": "type", "validated": true, "ani": 76.6064, "matched_fragments": 147, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 76.5974, "matched_fragments": 141, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 76.5564, "matched_fragments": 163, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagovum pacificum", "strain": "strain=SM1903", "accession": "GCA_016134045.1", "taxid": 2588711, "species_taxid": 2588711, "relation_to_type": "type", "validated": true, "ani": 76.553, "matched_fragments": 134, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagovum pacificum", "strain": "strain=SM1903", "accession": "GCA_006363825.1", "taxid": 2588711, "species_taxid": 2588711, "relation_to_type": "type", "validated": true, "ani": 76.5381, "matched_fragments": 136, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia saemankumensis", "strain": "strain=DSM 100565", "accession": "GCA_900141735.1", "taxid": 1447782, "species_taxid": 1447782, "relation_to_type": "type", "validated": true, "ani": 76.5333, "matched_fragments": 138, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.4185, "matched_fragments": 110, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 76.3945, "matched_fragments": 120, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter ethanolicus", "strain": "strain=NH195", "accession": "GCA_001550095.1", "taxid": 1758178, "species_taxid": 1758178, "relation_to_type": "type", "validated": true, "ani": 76.3686, "matched_fragments": 131, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceaniglobus trochenteri", "strain": "strain=G4", "accession": "GCA_020529025.1", "taxid": 2763260, "species_taxid": 2763260, "relation_to_type": "type", "validated": true, "ani": 76.3035, "matched_fragments": 157, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 76.2747, "matched_fragments": 123, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdonatronobacter sediminivivens", "strain": "strain=IM2376", "accession": "GCA_013415485.1", "taxid": 2743469, "species_taxid": 2743469, "relation_to_type": "type", "validated": true, "ani": 76.183, "matched_fragments": 102, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.93, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900184895.1", "gtdb_species": "s__Flavimaricola marinus", "ani": 77.326, "matched_fragments": 234, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Flavimaricola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114675.1", "gtdb_species": "s__Yoonia litorea", "ani": 77.1883, "matched_fragments": 154, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Yoonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113435.1", "gtdb_species": "s__Sulfitobacter dubius", "ani": 77.0652, "matched_fragments": 150, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.36", "min_intra_species_ani": "97.36", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007995245.1", "gtdb_species": "s__Tateyamaria sp007995245", "ani": 77.0491, "matched_fragments": 164, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tateyamaria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000814025.1", "gtdb_species": "s__Tateyamaria sp000814025", "ani": 77.0466, "matched_fragments": 166, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tateyamaria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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"matched_fragments": 158, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Loktanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001969365.1", "gtdb_species": "s__Tateyamaria omphalii_A", "ani": 76.8561, "matched_fragments": 176, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tateyamaria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000620505.1", "gtdb_species": "s__Ascidiaceihabitans sp000620505", "ani": 76.8005, "matched_fragments": 187, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009993005.1", "gtdb_species": "s__JAACUH01 sp009993005", "ani": 76.7886, "matched_fragments": 203, "total_fragments": 1009, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__JAACUH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.57", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002222635.1", "gtdb_species": "s__Ascidiaceihabitans pseudonitzschiae_A", "ani": 76.7883, "matched_fragments": 145, 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