{ "type": "genome", "identifier": "GCA_020633175.1", "organism": "Sandaracinus sp.", "title": "Sandaracinus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020633175.1", "bioproject": "PRJNA648801", "biosample": "SAMN15687765", "wgs_master": "JACKED000000000.1", "refseq_category": "na", "taxid": "2024858", "species_taxid": "2024858", "organism_name": "Sandaracinus sp.", "infraspecific_name": "", "isolate": "HK-STAS-MYXO-24", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2063317v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/633/175/GCA_020633175.1_ASM2063317v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Sandaracinus sp." ], "sample_taxid": [ "2024858" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hong Kong Special Administrative Region" ], "sample_host_location_id": [], "data_size": "2.040 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.71, "contamination": 1.85, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7648062", "Number of Sequences": "202", "Longest Sequences (bp)": "281361", "N50 (bp)": "104864", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "6211", "Average Protein Length": "348.9", "Coding Ratio (%)": "85.0", "Number of rRNAs": "0", "Number of tRNAs": "65", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 75.8966, "matched_fragments": 975, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labilithrix luteola", "strain": "strain=DSM 27648", "accession": "GCA_001263205.1", "taxid": 1391654, "species_taxid": 1391654, "relation_to_type": "type", "validated": true, "ani": 75.362, "matched_fragments": 430, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium fumosum", "strain": "strain=DSM 14668", "accession": "GCA_005144585.1", "taxid": 889272, "species_taxid": 889272, "relation_to_type": "neotype", "validated": true, "ani": 75.218, "matched_fragments": 500, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 75.1601, "matched_fragments": 547, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium spumosum", "strain": "strain=DSM 14734", "accession": "GCA_009649845.1", "taxid": 889282, "species_taxid": 889282, "relation_to_type": "type", "validated": true, "ani": 75.146, "matched_fragments": 557, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.1436, "matched_fragments": 316, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium escambiense", "strain": "strain=DSM 10707", "accession": "GCA_000428825.1", "taxid": 29503, "species_taxid": 29503, "relation_to_type": "type", "validated": true, "ani": 75.0867, "matched_fragments": 51, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.0421, "matched_fragments": 553, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.0279, "matched_fragments": 553, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 75.0218, "matched_fragments": 138, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Immundisolibacter cernigliae", "strain": "strain=TR3.2", "accession": "GCA_001697225.1", "taxid": 1810504, "species_taxid": 1810504, "relation_to_type": "type", "validated": true, "ani": 75.0054, "matched_fragments": 62, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 75.0035, "matched_fragments": 124, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lichenibacterium minor", "strain": "strain=RmlP026", "accession": "GCA_004137685.1", "taxid": 2316528, "species_taxid": 2316528, "relation_to_type": "type", "validated": true, "ani": 74.9408, "matched_fragments": 188, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 74.897, "matched_fragments": 99, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea alba", "strain": "strain=NEAU-D13", "accession": "GCA_011067745.1", "taxid": 2714351, "species_taxid": 2714351, "relation_to_type": "type", "validated": true, "ani": 74.8936, "matched_fragments": 236, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=DSM 103570", "accession": "GCA_014196845.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 74.8849, "matched_fragments": 122, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia enhydra", "strain": "strain=ATCC 23634", "accession": "GCA_900119845.1", "taxid": 665118, "species_taxid": 665118, "relation_to_type": "type", "validated": true, "ani": 74.8785, "matched_fragments": 57, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium italicum", "strain": "strain=Rab10A", "accession": "GCA_002286915.1", "taxid": 1960968, "species_taxid": 1960968, "relation_to_type": "type", "validated": true, "ani": 74.869, "matched_fragments": 95, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides glacieisoli", "strain": "strain=HLT3-15", "accession": "GCA_004137245.1", "taxid": 1168730, "species_taxid": 1168730, "relation_to_type": "type", "validated": true, "ani": 74.8591, "matched_fragments": 189, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 74.8564, "matched_fragments": 125, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea pudingi", "strain": "strain=CGMCC 4.7319", "accession": "GCA_014646255.1", "taxid": 1789439, "species_taxid": 1789439, "relation_to_type": "type", "validated": true, "ani": 74.8482, "matched_fragments": 238, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides phosphati", "strain": "strain=CGMCC 4.7371", "accession": 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74.7615, "matched_fragments": 263, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 74.6973, "matched_fragments": 206, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia humi", "strain": "strain=DSM 45298", "accession": "GCA_014197435.1", "taxid": 686429, "species_taxid": 686429, "relation_to_type": "type", "validated": true, "ani": 74.6707, "matched_fragments": 138, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas susongensis", "strain": "strain=A31", "accession": "GCA_005877005.1", "taxid": 1324851, "species_taxid": 1324851, "relation_to_type": "type", "validated": true, "ani": 74.6596, "matched_fragments": 90, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium eulemuris", "strain": "strain=DSM 100216", "accession": "GCA_014898155.1", "taxid": 1765219, "species_taxid": 1765219, "relation_to_type": "type", "validated": true, "ani": 74.6429, "matched_fragments": 54, "total_fragments": 2443, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.71, "contamination": 1.85, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002699025.1", "gtdb_species": "s__GCA-2699025 sp002699025", "ani": 77.6396, "matched_fragments": 954, "total_fragments": 2443, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__GCA-2699025", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017644045.1", "gtdb_species": 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