{ "type": "genome", "identifier": "GCA_020633515.1", "organism": "Myxococcales bacterium", "title": "Myxococcales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020633515.1", "bioproject": "PRJNA648801", "biosample": "SAMN15687748", "wgs_master": "JACKDM000000000.1", "refseq_category": "na", "taxid": "2026763", "species_taxid": "2026763", "organism_name": "Myxococcales bacterium", "infraspecific_name": "", "isolate": "HK-STAS-MYXO-7", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2063351v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/633/515/GCA_020633515.1_ASM2063351v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcales bacterium" ], "sample_taxid": [ "2026763" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hong Kong Special Administrative Region" ], "sample_host_location_id": [], "data_size": "1.169 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.38, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4509287", "Number of Sequences": "96", "Longest Sequences (bp)": "189078", "N50 (bp)": "74010", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.4", "Number of CDSs": "3416", "Average Protein Length": "386.4", "Coding Ratio (%)": "87.8", "Number of rRNAs": "3", "Number of tRNAs": "26", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 75.5215, "matched_fragments": 179, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas ferrireducens", "strain": "strain=S62", "accession": "GCA_004917065.1", "taxid": 2570227, "species_taxid": 2570227, "relation_to_type": "type", "validated": true, "ani": 75.471, "matched_fragments": 67, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas edaphica", "strain": "strain=Red53", "accession": "GCA_004917075.1", "taxid": 2570226, "species_taxid": 2570226, "relation_to_type": "type", "validated": true, "ani": 75.4642, "matched_fragments": 58, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 75.1581, "matched_fragments": 192, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.1136, "matched_fragments": 670, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 75.0944, "matched_fragments": 490, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.0775, "matched_fragments": 684, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 75.0553, "matched_fragments": 189, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas terrae", "strain": "strain=Red111", "accession": "GCA_004791675.1", "taxid": 2562681, "species_taxid": 2562681, "relation_to_type": "type", "validated": true, "ani": 75.0236, "matched_fragments": 58, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_001027285.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 74.9808, "matched_fragments": 273, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 74.9767, "matched_fragments": 255, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 74.939, "matched_fragments": 208, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 74.9176, "matched_fragments": 265, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exercitus", "strain": "strain=AB043A", "accession": "GCA_003611585.1", "taxid": 2316736, "species_taxid": 2316736, "relation_to_type": "type", "validated": true, "ani": 74.9166, "matched_fragments": 228, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 74.8866, "matched_fragments": 267, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia abscessus", "strain": "strain=FDAARGOS_1596", "accession": "GCA_020731305.1", "taxid": 120957, "species_taxid": 120957, "relation_to_type": "suspected-type", "validated": true, "ani": 74.8089, "matched_fragments": 247, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia exalbida", "strain": "strain=NBRC 100660", "accession": "GCA_000308575.1", "taxid": 290231, "species_taxid": 290231, "relation_to_type": "type", "validated": true, "ani": 74.795, "matched_fragments": 224, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia arthritidis", "strain": "strain=NBRC 100137", "accession": "GCA_001612765.1", "taxid": 228602, "species_taxid": 228602, "relation_to_type": "type", "validated": true, "ani": 74.7797, "matched_fragments": 220, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia abscessus", "strain": "strain=NBRC 100374", "accession": "GCA_000308455.1", "taxid": 120957, "species_taxid": 120957, "relation_to_type": "suspected-type", "validated": true, "ani": 74.7571, "matched_fragments": 245, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia pneumoniae", "strain": "strain=NBRC 100136", "accession": "GCA_000308755.1", "taxid": 228601, "species_taxid": 228601, "relation_to_type": "type", "validated": true, "ani": 74.6946, "matched_fragments": 242, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.38, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009692505.1", "gtdb_species": "s__SHZC01 sp009692505", "ani": 76.0226, "matched_fragments": 262, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__UBA7976;f__UBA1532;g__SHZC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903847385.1", "gtdb_species": "s__CAINDO01 sp903847385", "ani": 75.9495, "matched_fragments": 554, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__UBA7976;f__UBA1532;g__CAINDO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016717005.1", "gtdb_species": "s__UBA2376 sp016717005", "ani": 75.3114, "matched_fragments": 662, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__Haliangiaceae;g__UBA2376", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018813065.1", "gtdb_species": "s__JAHJCH01 sp018813065", "ani": 75.2747, "matched_fragments": 252, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__UBA7976;f__UBA1532;g__JAHJCH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013340205.1", "gtdb_species": "s__R267 sp013340205", "ani": 75.273, "matched_fragments": 427, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__R267", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018057825.1", "gtdb_species": "s__UBA2376 sp018057825", "ani": 75.2236, "matched_fragments": 603, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__Haliangiaceae;g__UBA2376", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003242475.1", "gtdb_species": "s__ZC4RG40 sp003242475", "ani": 75.1719, "matched_fragments": 130, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Vulgatibacteraceae;g__ZC4RG40", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016214955.1", "gtdb_species": "s__JACRMN01 sp016214955", "ani": 75.1362, "matched_fragments": 352, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__JACRMN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017994815.1", "gtdb_species": "s__JAGOJY01 sp017994815", "ani": 75.0164, "matched_fragments": 330, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Mor1;o__J045;f__J045;g__JAGOJY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003695625.1", "gtdb_species": "s__J065 sp003695625", "ani": 74.915, "matched_fragments": 258, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Mor1;o__J045;f__J045;g__J065", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003696075.1", "gtdb_species": "s__J045 sp003696075", "ani": 74.8319, "matched_fragments": 162, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Mor1;o__J045;f__J045;g__J045", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012927745.1", "gtdb_species": "s__Roseomonas_B sp012927745", "ani": 74.8238, "matched_fragments": 274, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308575.1", "gtdb_species": "s__Nocardia exalbida", "ani": 74.8113, "matched_fragments": 219, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 96.7192, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015477775.1", "gtdb_species": "s__Nocardia abscessus_A", "ani": 74.796, "matched_fragments": 270, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016934575.1", "gtdb_species": "s__JAFGSN01 sp016934575", "ani": 74.7413, "matched_fragments": 56, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Fen-336;f__Fen-336;g__JAFGSN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009829295.1", "gtdb_species": "s__Nocardia sp009829295", "ani": 74.7319, "matched_fragments": 210, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016209595.1", "gtdb_species": "s__JACQVV01 sp016209595", "ani": 74.7006, "matched_fragments": 183, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__JACQVV01;o__JACQVV01;f__JACQVV01;g__JACQVV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308755.1", "gtdb_species": "s__Nocardia pneumoniae", "ani": 74.6901, "matched_fragments": 244, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017849335.1", "gtdb_species": "s__UBA10649 sp017849335", "ani": 74.6858, "matched_fragments": 114, "total_fragments": 1456, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__UBA10649", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.126, "cell_length": 0.61, "doubling_h": 0.801, "growth_tmp": 28.761, "optimum_tmp": 29.364, "optimum_ph": 7.8, "genome_size": 9965390.721, "gc_content": 69.329, "coding_genes": 8198.189, "rRNA16S_genes": 3.222, "tRNA_genes": 63.782, "gram_stain": 0.0, "sporulation": 0.928, "motility": 0.941, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Myxococcota", "c__Bradymonadia", "o__UBA7976", "f__UBA1532", "g__JACKDM01", "s__JACKDM01 sp020633515" ], "_genome_taxon": [ "Myxococcales", "bacterium", "d__Bacteria", "p__Myxococcota", "c__Bradymonadia", "o__UBA7976", "f__UBA1532", "g__JACKDM01", "s__JACKDM01 sp020633515", "Bacteria", "Myxococcota", "Bradymonadia", "UBA7976", "UBA1532", "JACKDM01", "JACKDM01", "sp020633515" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }