{
    "type": "genome",
    "identifier": "GCA_020633775.1",
    "organism": "Gemmatimonadales bacterium",
    "title": "Gemmatimonadales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020633775.1",
        "bioproject": "PRJNA648801",
        "biosample": "SAMN15687736",
        "wgs_master": "JACKDA000000000.1",
        "refseq_category": "na",
        "taxid": "2448054",
        "species_taxid": "2448054",
        "organism_name": "Gemmatimonadales bacterium",
        "infraspecific_name": "",
        "isolate": "HK-STAS-GEMM-1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/26",
        "asm_name": "ASM2063377v1",
        "submitter": "The University of Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/633/775/GCA_020633775.1_ASM2063377v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-26",
    "dateModified": "2021-10-26",
    "datePublished": "2021-10-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadales bacterium"
        ],
        "sample_taxid": [
            "2448054"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Hong Kong Special Administrative Region"
        ],
        "sample_host_location_id": [],
        "data_size": "0.554 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 58.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2066000",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "286440",
        "N50 (bp)": "130342",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.3",
        "Number of CDSs": "1938",
        "Average Protein Length": "318.9",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gemmatimonas groenlandica",
                "strain": "strain=TET16",
                "accession": "GCA_013004105.1",
                "taxid": 2732249,
                "species_taxid": 2732249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1398,
                "matched_fragments": 58,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0482,
                "matched_fragments": 177,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7525,
                "matched_fragments": 76,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas yunnanensis",
                "strain": "strain=YIM 3",
                "accession": "GCA_019898765.1",
                "taxid": 310400,
                "species_taxid": 310400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1219,
                "matched_fragments": 85,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas folli",
                "strain": "strain=RHCKR7",
                "accession": "GCA_019429525.1",
                "taxid": 2862497,
                "species_taxid": 2862497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0805,
                "matched_fragments": 85,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus kandeliicorticis",
                "strain": "strain=DSM 100723",
                "accession": "GCA_014137855.1",
                "taxid": 1759536,
                "species_taxid": 1759536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0751,
                "matched_fragments": 88,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus eversor",
                "strain": "strain=AB053B",
                "accession": "GCA_010894455.1",
                "taxid": 2709661,
                "species_taxid": 2709661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.061,
                "matched_fragments": 58,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter americanus",
                "strain": "strain=DSM 16676",
                "accession": "GCA_000420025.1",
                "taxid": 588672,
                "species_taxid": 588672,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0264,
                "matched_fragments": 95,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter medicamentivorans",
                "strain": "strain=I11",
                "accession": "GCA_000240225.2",
                "taxid": 1097667,
                "species_taxid": 1097667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9665,
                "matched_fragments": 116,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catellatospora chokoriensis",
                "strain": "strain=2-25(1)",
                "accession": "GCA_011297315.1",
                "taxid": 310353,
                "species_taxid": 310353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9555,
                "matched_fragments": 112,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter woesei",
                "strain": "strain=DSM 14684",
                "accession": "GCA_000025265.1",
                "taxid": 191495,
                "species_taxid": 191495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9344,
                "matched_fragments": 128,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrococcus jejuensis",
                "strain": "strain=DSM 22002",
                "accession": "GCA_900099705.1",
                "taxid": 399736,
                "species_taxid": 399736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8572,
                "matched_fragments": 90,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus parietis",
                "strain": "strain=DSM 22083",
                "accession": "GCA_013407955.1",
                "taxid": 682979,
                "species_taxid": 682979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8307,
                "matched_fragments": 90,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 58.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016704275.1",
                "gtdb_species": "s__Palsa-1233 sp016704275",
                "ani": 79.0434,
                "matched_fragments": 257,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016720805.1",
                "gtdb_species": "s__Palsa-1233 sp016720805",
                "ani": 78.9035,
                "matched_fragments": 270,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011390645.1",
                "gtdb_species": "s__Palsa-1233 sp011390645",
                "ani": 78.5293,
                "matched_fragments": 195,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013694695.1",
                "gtdb_species": "s__Palsa-1233 sp013694695",
                "ani": 77.9139,
                "matched_fragments": 167,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011362545.1",
                "gtdb_species": "s__DSTP01 sp011362545",
                "ani": 77.7635,
                "matched_fragments": 193,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DSTP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016713785.1",
                "gtdb_species": "s__JADJOM01 sp016713785",
                "ani": 77.7055,
                "matched_fragments": 183,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JADJOM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_003169895.1",
                "gtdb_species": "s__Palsa-1233 sp003169895",
                "ani": 77.6416,
                "matched_fragments": 143,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017889745.1",
                "gtdb_species": "s__JAGGAG01 sp017889745",
                "ani": 77.0686,
                "matched_fragments": 103,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JAGGAG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013812695.1",
                "gtdb_species": "s__JACDDX01 sp013812695",
                "ani": 76.857,
                "matched_fragments": 106,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013816685.1",
                "gtdb_species": "s__JACDDX01 sp013816685",
                "ani": 76.6931,
                "matched_fragments": 61,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013813675.1",
                "gtdb_species": "s__JACDDX01 sp013813675",
                "ani": 76.5977,
                "matched_fragments": 89,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013140635.1",
                "gtdb_species": "s__JABFSM01 sp013140635",
                "ani": 76.4389,
                "matched_fragments": 89,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JABFSM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900230255.1",
                "gtdb_species": "s__Caenispirillum bisanense",
                "ani": 75.132,
                "matched_fragments": 78,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Caenispirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018131015.1",
                "gtdb_species": "s__Bradyrhizobium diazoefficiens_B",
                "ani": 75.1056,
                "matched_fragments": 72,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016795285.1",
                "gtdb_species": "s__SIAN01 sp016795285",
                "ani": 75.024,
                "matched_fragments": 143,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__B15-G4;o__B15-G4;f__SIAN01;g__SIAN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": null,
        "doubling_h": 1.079,
        "growth_tmp": 30.0,
        "optimum_tmp": 27.5,
        "optimum_ph": null,
        "genome_size": 5607935.711,
        "gc_content": 67.113,
        "coding_genes": 4635.5,
        "rRNA16S_genes": 1.666,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__Palsa-1233",
        "s__Palsa-1233 sp020633775"
    ],
    "_genome_taxon": [
        "Gemmatimonadales",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__Palsa-1233",
        "s__Palsa-1233 sp020633775",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "GWC2-71-9",
        "Palsa-1233",
        "Palsa-1233",
        "sp020633775"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}