{ "type": "genome", "identifier": "GCA_020635875.1", "organism": "Flavobacteriales bacterium", "title": "Flavobacteriales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020635875.1", "bioproject": "PRJNA648801", "biosample": "SAMN15687629", "wgs_master": "JACJYY000000000.1", "refseq_category": "na", "taxid": "2021391", "species_taxid": "2021391", "organism_name": "Flavobacteriales bacterium", "infraspecific_name": "", "isolate": "HK-STAS-BACT-50", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2063587v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/635/875/GCA_020635875.1_ASM2063587v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriales bacterium" ], "sample_taxid": [ "2021391" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hong Kong Special Administrative Region" ], "sample_host_location_id": [], "data_size": "0.548 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1944370", "Number of Sequences": "12", "Longest Sequences (bp)": "396416", "N50 (bp)": "334350", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.7", "Number of CDSs": "1780", "Average Protein Length": "330.2", "Coding Ratio (%)": "90.7", "Number of rRNAs": "6", "Number of tRNAs": "31", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium haoranii", "strain": "strain=KCTC 23008", "accession": "GCA_009363055.1", "taxid": 683124, "species_taxid": 683124, "relation_to_type": "type", "validated": true, "ani": 77.5693, "matched_fragments": 63, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium haoranii", "strain": "strain=DSM 22807", "accession": "GCA_900142055.1", "taxid": 683124, "species_taxid": 683124, "relation_to_type": "type", "validated": true, "ani": 77.1653, "matched_fragments": 61, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.886, "matched_fragments": 61, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cucumis", "strain": "strain=DSM 18830", "accession": "GCA_900148835.1", "taxid": 416016, "species_taxid": 416016, "relation_to_type": "type", "validated": true, "ani": 76.7483, "matched_fragments": 58, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium palustre", "strain": "strain=CGMCC 1.12811", "accession": "GCA_014639535.1", "taxid": 1476463, "species_taxid": 1476463, "relation_to_type": "type", "validated": true, "ani": 76.7333, "matched_fragments": 58, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 76.7187, "matched_fragments": 60, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hercynium", "strain": "strain=DSM 18292", "accession": "GCA_002217285.1", "taxid": 387094, "species_taxid": 387094, "relation_to_type": "type", "validated": true, "ani": 76.5649, "matched_fragments": 63, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 76.2327, "matched_fragments": 54, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium weaverense", "strain": "strain=DSM 19727", "accession": "GCA_003688495.1", "taxid": 271156, "species_taxid": 271156, "relation_to_type": "type", "validated": true, "ani": 75.8158, "matched_fragments": 55, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004303025.1", "gtdb_species": "s__Flavobacterium sp004303025", "ani": 76.9746, "matched_fragments": 61, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900148835.1", "gtdb_species": "s__Flavobacterium cucumis", "ani": 76.7893, "matched_fragments": 57, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009495755.1", "gtdb_species": "s__Flavobacterium sp009495755", "ani": 76.721, "matched_fragments": 62, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000695795.1", "gtdb_species": "s__Flavobacterium seoulense", "ani": 76.6813, "matched_fragments": 59, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004368785.1", "gtdb_species": "s__Flavobacterium sp004368785", "ani": 76.1813, "matched_fragments": 54, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002862805.1", "gtdb_species": "s__Flavobacterium sp002862805", "ani": 75.9781, "matched_fragments": 60, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002422095.1", "gtdb_species": "s__Flavobacterium sp002422095", "ani": 75.864, "matched_fragments": 54, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003688495.1", "gtdb_species": "s__Flavobacterium weaverense", "ani": 75.8158, "matched_fragments": 55, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.337, "cell_length": 0.308, "doubling_h": 1.285, "growth_tmp": 26.455, "optimum_tmp": 26.685, "optimum_ph": 7.271, "genome_size": 3861663.667, "gc_content": 35.517, "coding_genes": 2961.142, "rRNA16S_genes": 3.684, "tRNA_genes": 48.763, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.372, "range_salinity": 0.615, "facultative_respiration": 0.042, "anaerobic_respiration": 0.012, "aerobic_respiration": 0.945, "mesophilic_range_tmp": 0.898, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.101, "bacillus_cell_shape": 0.982, "coccus_cell_shape": 0.005, "filament_cell_shape": 0.002, "coccobacillus_cell_shape": 0.01, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium sp020635875" ], "_genome_taxon": [ "Flavobacteriales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium sp020635875", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium", "sp020635875" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }