{
    "type": "genome",
    "identifier": "GCA_020693185.1",
    "organism": "Microcoleus sp. GA_180221_E-1-1-MAG-43_4",
    "title": "Microcoleus sp. GA_180221_E-1-1-MAG-43_4",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "University Duisburg-Essen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020693185.1",
        "bioproject": "PRJNA627655",
        "biosample": "SAMN20928774",
        "wgs_master": "JAIMJO000000000.1",
        "refseq_category": "na",
        "taxid": "2872243",
        "species_taxid": "2872243",
        "organism_name": "Microcoleus sp. GA_180221_E-1-1-MAG-43_4",
        "infraspecific_name": "",
        "isolate": "GA_180221_E-1-1-MAG-43_4",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/01",
        "asm_name": "ASM2069318v1",
        "submitter": "University Duisburg-Essen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/693/185/GCA_020693185.1_ASM2069318v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-01",
    "dateModified": "2021-11-01",
    "datePublished": "2021-11-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microcoleus sp. GA_180221_E-1-1-MAG-43_4"
        ],
        "sample_taxid": [
            "2872243"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Volcanic Eifel, Andernach",
            "- on dry ice (field) or in 80 C fridge (lab)"
        ],
        "sample_host_location_id": [],
        "data_size": "0.839 MB",
        "sample_ph_range": {
            "min": 68.0,
            "max": 68.0
        },
        "sample_temperature_range": {
            "min": 18.0,
            "max": 80.0
        },
        "completeness": 64.58,
        "contamination": 1.39,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2868408",
        "Number of Sequences": "1350",
        "Longest Sequences (bp)": "11802",
        "N50 (bp)": "2429",
        "Gap Ratio (%)": "1.796955",
        "GCcontent (%)": "43.5",
        "Number of CDSs": "1682",
        "Average Protein Length": "219.8",
        "Coding Ratio (%)": "38.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "18",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 64.58,
            "contamination": 1.39,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_014696345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014696355.1",
                "gtdb_species": "s__Pseudanabaena sp014696355",
                "ani": 78.9218,
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                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_species": "s__Pseudanabaena sp014696925",
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                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016584665.1",
                "gtdb_species": "s__Pseudanabaena sp016584665",
                "ani": 78.8627,
                "matched_fragments": 108,
                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001873375.1",
                "gtdb_species": "s__Pseudanabaena sp001873375",
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                "matched_fragments": 109,
                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013361095.1",
                "gtdb_species": "s__Pseudanabaena biceps_B",
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                "matched_fragments": 114,
                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002325645.1",
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                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002251945.1",
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                "total_fragments": 248,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903819605.1",
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                "matched_fragments": 77,
                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
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            },
            {
                "accession": "GCA_003249035.1",
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                "total_fragments": 248,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003967015.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002914585.1",
                "gtdb_species": "s__Pseudanabaena sp002914585",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012863495.1",
                "gtdb_species": "s__Pseudanabaena yagii",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Pseudanabaenales;f__Pseudanabaenaceae;g__Pseudanabaena",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 22.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 6646136.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Pseudanabaenales",
        "f__Pseudanabaenaceae",
        "g__Pseudanabaena",
        "s__"
    ],
    "_genome_taxon": [
        "Microcoleus",
        "sp.",
        "GA_180221_E-1-1-MAG-43_4",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
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        "f__Pseudanabaenaceae",
        "g__Pseudanabaena",
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        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Pseudanabaenales",
        "Pseudanabaenaceae",
        "Pseudanabaena",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000181",
            "label": "aquifer"
        },
        {
            "id": "MEO_0001480",
            "label": "subsurface"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}