{ "type": "genome", "identifier": "GCA_020696975.1", "organism": "Methanoculleus sp.", "title": "Methanoculleus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Anhui University of Science & Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020696975.1", "bioproject": "PRJNA773915", "biosample": "SAMN22543508", "wgs_master": "JAJGBK000000000.1", "refseq_category": "na", "taxid": "90427", "species_taxid": "90427", "organism_name": "Methanoculleus sp.", "infraspecific_name": "", "isolate": "NL_3.1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/01", "asm_name": "ASM2069697v1", "submitter": "Anhui University of Science & Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/696/975/GCA_020696975.1_ASM2069697v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-01", "dateModified": "2021-11-01", "datePublished": "2021-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanoculleus sp." ], "sample_taxid": [ "90427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Huainan" ], "sample_host_location_id": [], "data_size": "0.643 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2287273", "Number of Sequences": "33", "Longest Sequences (bp)": "333371", "N50 (bp)": "155279", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.7", "Number of CDSs": "2291", "Average Protein Length": "286.7", "Coding Ratio (%)": "86.1", "Number of rRNAs": "4", "Number of tRNAs": "50", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanoculleus chikugoensis", "strain": "strain=MG62", "accession": "GCA_019669965.1", "taxid": 118126, "species_taxid": 118126, "relation_to_type": "type", "validated": true, "ani": 85.734, "matched_fragments": 590, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus sediminis", "strain": "strain=S3Fa", "accession": "GCA_001017125.1", "taxid": 1550566, "species_taxid": 1550566, "relation_to_type": "type", "validated": true, "ani": 85.7165, "matched_fragments": 593, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus marisnigri", "strain": "strain=JR1", "accession": "GCA_000015825.1", "taxid": 2198, "species_taxid": 2198, "relation_to_type": "type", "validated": true, "ani": 85.5973, "matched_fragments": 595, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus thermophilus", "strain": "strain=CR-1", "accession": "GCA_001571405.1", "taxid": 2200, "species_taxid": 2200, "relation_to_type": "type", "validated": true, "ani": 85.5232, "matched_fragments": 585, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus horonobensis", "strain": "strain=T10", "accession": "GCA_001602375.1", "taxid": 528314, "species_taxid": 528314, "relation_to_type": "type", "validated": true, "ani": 85.4946, "matched_fragments": 597, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus thermophilus", "strain": "strain=DSM 2373", "accession": "GCA_900101055.1", "taxid": 2200, "species_taxid": 2200, "relation_to_type": "type", "validated": true, "ani": 85.4908, "matched_fragments": 580, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus chikugoensis", "strain": "strain=JCM 10825", "accession": "GCA_001315965.1", "taxid": 118126, "species_taxid": 118126, "relation_to_type": "type", "validated": true, "ani": 85.0672, "matched_fragments": 487, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus bourgensis", "strain": "strain=MS2T", "accession": "GCA_000304355.2", "taxid": 83986, "species_taxid": 83986, "relation_to_type": "type", "validated": true, "ani": 83.4091, "matched_fragments": 549, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016841955.1", "gtdb_species": "s__Methanoculleus sp016841955", "ani": 86.1093, "matched_fragments": 587, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002498065.1", "gtdb_species": "s__Methanoculleus sp002498065", "ani": 86.0497, "matched_fragments": 540, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018433835.1", "gtdb_species": "s__Methanoculleus sp018433835", "ani": 85.7812, "matched_fragments": 592, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002506585.1", "gtdb_species": "s__Methanoculleus sp002506585", "ani": 85.7405, "matched_fragments": 577, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001017125.1", "gtdb_species": "s__Methanoculleus sediminis", "ani": 85.7165, "matched_fragments": 593, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900095385.1", "gtdb_species": "s__Methanoculleus chikugoensis_A", "ani": 85.6248, "matched_fragments": 573, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002839645.1", "gtdb_species": "s__Methanoculleus sp002839645", "ani": 85.5946, "matched_fragments": 583, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002503885.1", "gtdb_species": "s__Methanoculleus marisnigri_B", "ani": 85.498, "matched_fragments": 530, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "97.72", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_017874195.1", "gtdb_species": "s__Methanoculleus hydrogenitrophicus", "ani": 85.4256, "matched_fragments": 583, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002508705.1", "gtdb_species": "s__Methanoculleus sp002508705", "ani": 84.125, "matched_fragments": 530, "total_fragments": 746, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.48", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 14, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.042, "cell_length": -0.042, "doubling_h": 0.977, "growth_tmp": 40.952, "optimum_tmp": 40.204, "optimum_ph": 6.907, "genome_size": 2441843.114, "gc_content": 60.765, "coding_genes": 2468.875, "rRNA16S_genes": 1.0, "tRNA_genes": 48.166, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.5, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanoculleaceae", "g__Methanoculleus", "s__Methanoculleus sp020696975" ], "_genome_taxon": [ "Methanoculleus", "sp.", "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanoculleaceae", "g__Methanoculleus", "s__Methanoculleus sp020696975", "Archaea", "Halobacteriota", "Methanomicrobia", "Methanomicrobiales", "Methanoculleaceae", "Methanoculleus", "Methanoculleus", "sp020696975" ], "_meo": [ { "id": "MEO_0000639", "label": "coal" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }