{
    "type": "genome",
    "identifier": "GCA_020697375.1",
    "organism": "Nitrospira sp.",
    "title": "Nitrospira sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Colorado State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020697375.1",
        "bioproject": "PRJNA725542",
        "biosample": "SAMN20393774",
        "wgs_master": "JAJFBJ000000000.1",
        "refseq_category": "na",
        "taxid": "70125",
        "species_taxid": "70125",
        "organism_name": "Nitrospira sp.",
        "infraspecific_name": "",
        "isolate": "C_No_T20_A_bin.15",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/01",
        "asm_name": "ASM2069737v1",
        "submitter": "Colorado State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/697/375/GCA_020697375.1_ASM2069737v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-01",
    "dateModified": "2021-11-01",
    "datePublished": "2021-11-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospira sp."
        ],
        "sample_taxid": [
            "70125"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Colorado, Fort Collins"
        ],
        "sample_host_location_id": [],
        "data_size": "1.304 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 62.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4546262",
        "Number of Sequences": "246",
        "Longest Sequences (bp)": "205348",
        "N50 (bp)": "34376",
        "Gap Ratio (%)": "0.000066",
        "GCcontent (%)": "57.1",
        "Number of CDSs": "4163",
        "Average Protein Length": "290.3",
        "Coding Ratio (%)": "79.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrospira moscoviensis",
                "strain": "strain=NSP M-1",
                "accession": "GCA_001273775.1",
                "taxid": 42253,
                "species_taxid": 42253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6603,
                "matched_fragments": 159,
                "total_fragments": 1398,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 62.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016199015.1",
                "gtdb_species": "s__Nitrospira_A defluvii_B",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013696305.1",
                "gtdb_species": "s__Nitrospira_A sp013696305",
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                "matched_fragments": 491,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900170025.1",
                "gtdb_species": "s__Nitrospira_A sp900170025",
                "ani": 78.9107,
                "matched_fragments": 541,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "96.85",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCA_902500785.1",
                "gtdb_species": "s__Nitrospira_A sp902500785",
                "ani": 78.6985,
                "matched_fragments": 510,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000196815.1",
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                "ani": 78.6407,
                "matched_fragments": 513,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "99.59",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009594995.1",
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                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902500715.1",
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                "matched_fragments": 416,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017986555.1",
                "gtdb_species": "s__Nitrospira_A sp017986555",
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                "matched_fragments": 446,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014055465.1",
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                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.94",
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            },
            {
                "accession": "GCA_014055495.1",
                "gtdb_species": "s__Nitrospira_A sp014055495",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_902500995.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_009594865.1",
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                "status": "-"
            },
            {
                "accession": "GCA_016788885.1",
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCA_900696505.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.388,
        "cell_length": null,
        "doubling_h": 1.079,
        "growth_tmp": null,
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        "coding_genes": 3920.25,
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        "tRNA_genes": 46.5,
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        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
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        "aerobic_respiration": null,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
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        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_A",
        "s__Nitrospira_A sp020697375"
    ],
    "_genome_taxon": [
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        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__Nitrospira_A",
        "s__Nitrospira_A sp020697375",
        "Bacteria",
        "Nitrospirota",
        "Nitrospiria",
        "Nitrospirales",
        "Nitrospiraceae",
        "Nitrospira",
        "A",
        "Nitrospira",
        "A",
        "sp020697375"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}