{
    "type": "genome",
    "identifier": "GCA_020717985.1",
    "organism": "Herpetosiphon sp.",
    "title": "Herpetosiphon sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University Duisburg-Essen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020717985.1",
        "bioproject": "PRJNA767587",
        "biosample": "SAMN21363068",
        "wgs_master": "DYDH00000000.1",
        "refseq_category": "na",
        "taxid": "71864",
        "species_taxid": "71864",
        "organism_name": "Herpetosiphon sp.",
        "infraspecific_name": "",
        "isolate": "IMS_BF",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/02",
        "asm_name": "ASM2071798v1",
        "submitter": "University Duisburg-Essen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/717/985/GCA_020717985.1_ASM2071798v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-02",
    "dateModified": "2021-11-02",
    "datePublished": "2021-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Herpetosiphon sp."
        ],
        "sample_taxid": [
            "71864"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Sulfidic spring near Regensburg"
        ],
        "sample_host_location_id": [],
        "data_size": "1.572 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.52,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5457795",
        "Number of Sequences": "637",
        "Longest Sequences (bp)": "109435",
        "N50 (bp)": "18477",
        "Gap Ratio (%)": "0.300268",
        "GCcontent (%)": "49.9",
        "Number of CDSs": "4461",
        "Average Protein Length": "315.7",
        "Coding Ratio (%)": "77.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_013140605.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
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                "accession": "GCA_016234495.1",
                "gtdb_species": "s__OLB14 sp016234495",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__OLB14",
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            },
            {
                "accession": "GCA_016219545.1",
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            },
            {
                "accession": "GCA_016709305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__OLB14",
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            },
            {
                "accession": "GCA_016718275.1",
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                "total_fragments": 1507,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__OLB14",
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "matched_fragments": 391,
                "total_fragments": 1507,
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                "mean_intra_species_ani": "99.53",
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            },
            {
                "accession": "GCA_016191985.1",
                "gtdb_species": "s__OLB14 sp016191985",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__EnvOPS12;g__OLB14",
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            },
            {
                "accession": "GCA_016703605.1",
                "gtdb_species": "s__OLB14 sp016703605",
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            },
            {
                "accession": "GCA_016235425.1",
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            {
                "accession": "GCA_002343775.1",
                "gtdb_species": "s__OLB14 sp002343775",
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCA_900696595.1",
                "gtdb_species": "s__OLB14 sp900696595",
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 1.0,
        "doubling_h": null,
        "growth_tmp": 27.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 6140412.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Anaerolineales",
        "f__Villigracilaceae",
        "g__Villigracilis",
        "s__Villigracilis sp020717985"
    ],
    "_genome_taxon": [
        "Herpetosiphon",
        "sp.",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Anaerolineales",
        "f__Villigracilaceae",
        "g__Villigracilis",
        "s__Villigracilis sp020717985",
        "Bacteria",
        "Chloroflexota",
        "Anaerolineae",
        "Anaerolineales",
        "Villigracilaceae",
        "Villigracilis",
        "Villigracilis",
        "sp020717985"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}