{ "type": "genome", "identifier": "GCA_020718145.1", "organism": "Flavobacterium psychrophilum", "title": "Flavobacterium psychrophilum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020718145.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209636", "wgs_master": "DYSS00000000.1", "refseq_category": "na", "taxid": "96345", "species_taxid": "96345", "organism_name": "Flavobacterium psychrophilum", "infraspecific_name": "", "isolate": "SulCav_PC08_3_31_36", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2071814v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/718/145/GCA_020718145.1_ASM2071814v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium psychrophilum" ], "sample_taxid": [ "96345" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Frasassi cave" ], "sample_host_location_id": [], "data_size": "0.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2258805", "Number of Sequences": "68", "Longest Sequences (bp)": "193281", "N50 (bp)": "61724", "Gap Ratio (%)": "0.146095", "GCcontent (%)": "31.4", "Number of CDSs": "1975", "Average Protein Length": "337.2", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=ATCC 49418", "accession": "GCA_002217405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 77.8024, "matched_fragments": 211, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=DSM 3660", "accession": "GCA_900101925.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 77.7549, "matched_fragments": 215, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=FPG3", "accession": "GCA_000754405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 77.7522, "matched_fragments": 215, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.7092, "matched_fragments": 147, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium swingsii", "strain": "strain=DSM 21789", "accession": "GCA_900111965.1", "taxid": 498292, "species_taxid": 498292, "relation_to_type": "type", "validated": true, "ani": 77.6432, "matched_fragments": 255, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 77.3562, "matched_fragments": 129, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lutivivi", "strain": "strain=CGMCC 1.15347", "accession": "GCA_014642275.1", "taxid": 1677894, "species_taxid": 1677894, "relation_to_type": "type", "validated": true, "ani": 77.245, "matched_fragments": 133, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium weaverense", "strain": "strain=DSM 19727", "accession": "GCA_003688495.1", "taxid": 271156, "species_taxid": 271156, "relation_to_type": "type", "validated": true, "ani": 77.2085, "matched_fragments": 118, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.2009, "matched_fragments": 144, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 77.1301, "matched_fragments": 136, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium segetis", "strain": "strain=DSM 19741", "accession": "GCA_900129575.1", "taxid": 271157, "species_taxid": 271157, "relation_to_type": "type", "validated": true, "ani": 77.0392, "matched_fragments": 116, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.0267, "matched_fragments": 122, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium terrae", "strain": "strain=DSM 18829", "accession": "GCA_900142035.1", "taxid": 415425, "species_taxid": 415425, "relation_to_type": "type", "validated": true, "ani": 77.0197, "matched_fragments": 154, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 77.0164, "matched_fragments": 141, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 76.9905, "matched_fragments": 138, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 76.9439, "matched_fragments": 151, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 76.9395, "matched_fragments": 155, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 76.9314, "matched_fragments": 155, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_900182645.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 76.8666, "matched_fragments": 135, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, "relation_to_type": "type", "validated": true, "ani": 76.8626, "matched_fragments": 102, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 76.8539, "matched_fragments": 134, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 76.8459, "matched_fragments": 120, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 76.8452, "matched_fragments": 136, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 76.8164, "matched_fragments": 141, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tangerinum", "strain": "strain=YIM 102701-2", "accession": "GCA_003865405.1", "taxid": 2488728, "species_taxid": 2488728, "relation_to_type": "type", "validated": true, "ani": 76.7688, "matched_fragments": 94, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=ATCC 35035", "accession": "GCA_002217205.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.7502, "matched_fragments": 141, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 76.7225, "matched_fragments": 155, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=NBRC 15030", "accession": "GCA_007990815.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.6998, "matched_fragments": 143, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 76.661, "matched_fragments": 121, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.6321, "matched_fragments": 148, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter lentus", "strain": "strain=HJM-3", "accession": "GCA_002806995.1", "taxid": 1699412, "species_taxid": 1699412, "relation_to_type": "type", "validated": true, "ani": 76.1946, "matched_fragments": 52, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013298525.1", "gtdb_species": "s__Flavobacterium sp013298525", "ani": 78.0134, "matched_fragments": 164, "total_fragments": 721, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000757385.1", "gtdb_species": "s__Flavobacterium aquatile", "ani": 77.9671, "matched_fragments": 162, "total_fragments": 721, "gtdb_taxonomy": 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