{ "type": "genome", "identifier": "GCA_020718155.1", "organism": "Nitratiruptor sp.", "title": "Nitratiruptor sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020718155.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209634", "wgs_master": "DYSQ00000000.1", "refseq_category": "na", "taxid": "2081525", "species_taxid": "2081525", "organism_name": "Nitratiruptor sp.", "infraspecific_name": "", "isolate": "SulCav_PC08_3_31_454", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2071815v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/718/155/GCA_020718155.1_ASM2071815v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Nitratiruptor sp." ], "sample_taxid": [ "2081525" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Frasassi cave" ], "sample_host_location_id": [], "data_size": "0.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2225704", "Number of Sequences": "474", "Longest Sequences (bp)": "58485", "N50 (bp)": "12308", "Gap Ratio (%)": "0.098845", "GCcontent (%)": "30.9", "Number of CDSs": "1871", "Average Protein Length": "288.4", "Coding Ratio (%)": "72.7", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcobacter aquimarinus", "strain": "strain=W63", "accession": "GCA_013177635.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 77.5071, "matched_fragments": 132, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=CECT 8442", "accession": "GCA_004115795.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 77.4821, "matched_fragments": 124, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter cloacae", "strain": "strain=LMG 26153", "accession": "GCA_013201935.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 77.3897, "matched_fragments": 142, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter cloacae", "strain": "strain=CECT 7834", "accession": "GCA_004115805.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 77.3599, "matched_fragments": 140, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter lanthieri", "strain": "strain=LMG 28516", "accession": "GCA_013201625.1", "taxid": 1355374, "species_taxid": 1355374, "relation_to_type": "type", "validated": true, "ani": 77.267, "matched_fragments": 113, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT 7833", "accession": "GCA_003544815.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 77.213, "matched_fragments": 118, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=NCTC 12481", "accession": "GCA_900187115.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 77.2046, "matched_fragments": 119, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter cryaerophilus", "strain": "strain=ATCC 43158", "accession": "GCA_003660105.1", "taxid": 28198, "species_taxid": 28198, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1882, "matched_fragments": 112, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=RM4018", "accession": "GCA_000014025.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 77.1615, "matched_fragments": 120, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=CECT 7837", "accession": "GCA_004115815.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 77.159, "matched_fragments": 135, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT7833", "accession": "GCA_004023465.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 77.1483, "matched_fragments": 114, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter cryaerophilus", "strain": "strain=LMG 24291", "accession": "GCA_002992955.1", "taxid": 28198, "species_taxid": 28198, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1279, "matched_fragments": 110, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=LMG 10828", "accession": "GCA_024584145.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 77.1196, "matched_fragments": 120, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter cryaerophilus", "strain": "strain=LMG 9904", "accession": "GCA_006165035.1", "taxid": 28198, "species_taxid": 28198, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0921, "matched_fragments": 117, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=LMG 26155", "accession": "GCA_003544915.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 77.0725, "matched_fragments": 131, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter faecis", "strain": "strain=CCUG 66484", "accession": "GCA_013201705.1", "taxid": 1564138, "species_taxid": 1564138, "relation_to_type": "type", "validated": true, "ani": 76.9948, "matched_fragments": 122, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Arcobacter] porcinus", "strain": "strain=CCUG 56899", "accession": "GCA_004299785.2", "taxid": 1935204, "species_taxid": 1935204, "relation_to_type": "type", "validated": true, "ani": 76.9578, "matched_fragments": 124, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 76.7121, "matched_fragments": 101, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=LMG 25694", "accession": "GCA_013201725.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 76.6927, "matched_fragments": 140, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=CECT 7697", "accession": "GCA_004115775.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 76.6439, "matched_fragments": 146, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 76.6357, "matched_fragments": 105, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poseidonibacter lekithochrous", "strain": "strain=DSM 100870", "accession": "GCA_013283835.1", "taxid": 1904463, "species_taxid": 1904463, "relation_to_type": "type", "validated": true, "ani": 76.5725, "matched_fragments": 93, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=F98-3", "accession": "GCA_002701265.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 76.5718, "matched_fragments": 106, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poseidonibacter lekithochrous", "strain": "strain=LFT 1.7", "accession": "GCA_001878855.1", "taxid": 1904463, "species_taxid": 1904463, "relation_to_type": "type", "validated": true, "ani": 76.4572, "matched_fragments": 93, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 76.4149, "matched_fragments": 106, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter canalis", "strain": "strain=F138-33", "accession": "GCA_002723485.1", "taxid": 1912871, "species_taxid": 1912871, "relation_to_type": "type", "validated": true, "ani": 76.4125, "matched_fragments": 110, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter canalis", "strain": "strain=LMG 29148", "accession": "GCA_008000835.1", "taxid": 1912871, "species_taxid": 1912871, "relation_to_type": "type", "validated": true, "ani": 76.4023, "matched_fragments": 112, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 76.386, "matched_fragments": 102, "total_fragments": 502, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903821805.1", "gtdb_species": "s__CAIJNA01 sp903821805", "ani": 81.4846, "matched_fragments": 164, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__CAIJNA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013177635.1", "gtdb_species": "s__Aliarcobacter aquimarinus", "ani": 77.5071, "matched_fragments": 132, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013201935.1", "gtdb_species": "s__Aliarcobacter cloacae", "ani": 77.387, "matched_fragments": 143, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "95.91", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002993025.1", "gtdb_species": "s__Aliarcobacter cryaerophilus_B", "ani": 77.3453, "matched_fragments": 120, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013201625.1", "gtdb_species": "s__Aliarcobacter lanthieri", "ani": 77.267, "matched_fragments": 113, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "95.77", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003544815.1", "gtdb_species": "s__Aliarcobacter suis", "ani": 77.1908, "matched_fragments": 119, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003660105.1", "gtdb_species": "s__Aliarcobacter cryaerophilus", "ani": 77.1631, "matched_fragments": 113, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900187115.1", "gtdb_species": "s__Aliarcobacter butzleri", "ani": 77.1586, "matched_fragments": 121, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 50, "status": "-" }, { "accession": "GCA_017995775.1", "gtdb_species": "s__Aliarcobacter sp017995775", "ani": 77.1, "matched_fragments": 112, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003544915.1", "gtdb_species": "s__Aliarcobacter ellisii", "ani": 77.0931, "matched_fragments": 131, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.73", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905479135.1", "gtdb_species": "s__Poseidonibacter sp905479135", "ani": 77.0201, "matched_fragments": 70, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004214815.1", "gtdb_species": "s__Aliarcobacter thereius", "ani": 77.0009, "matched_fragments": 111, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_004116725.1", "gtdb_species": "s__Malaciobacter sp004116725", "ani": 76.9767, "matched_fragments": 102, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004299785.2", "gtdb_species": "s__Aliarcobacter porcinus", "ani": 76.9578, "matched_fragments": 124, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_001895145.1", "gtdb_species": "s__Halarcobacter sp001895145", "ani": 76.95, "matched_fragments": 95, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009208075.1", "gtdb_species": "s__Poseidonibacter sp009208075", "ani": 76.6635, "matched_fragments": 106, "total_fragments": 502, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", 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"quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }