{ "type": "genome", "identifier": "GCA_020718605.1", "organism": "Chthoniobacter flavus", "title": "Chthoniobacter flavus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020718605.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209609", "wgs_master": "DYRR00000000.1", "refseq_category": "na", "taxid": "191863", "species_taxid": "191863", "organism_name": "Chthoniobacter flavus", "infraspecific_name": "", "isolate": "SulCav_GS10_10_4_61_12", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2071860v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/718/605/GCA_020718605.1_ASM2071860v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Chthoniobacter flavus" ], "sample_taxid": [ "191863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Frasassi cave" ], "sample_host_location_id": [], "data_size": "0.700 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2459445", "Number of Sequences": "284", "Longest Sequences (bp)": "54016", "N50 (bp)": "14724", "Gap Ratio (%)": "0.095591", "GCcontent (%)": "61.0", "Number of CDSs": "2122", "Average Protein Length": "315.9", "Coding Ratio (%)": "81.8", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Terrimicrobium sacchariphilum", "strain": "strain=NM-5", "accession": "GCA_001613545.1", "taxid": 690879, "species_taxid": 690879, "relation_to_type": "type", "validated": true, "ani": 76.2079, "matched_fragments": 59, "total_fragments": 672, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903874975.1", "gtdb_species": "s__Chthoniobacter sp903874975", "ani": 76.927, "matched_fragments": 57, "total_fragments": 672, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Chthoniobacter", "ani_circumscription_radius": 95.0, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903928175.1", "gtdb_species": "s__UBA695 sp903928175", "ani": 76.4657, "matched_fragments": 53, "total_fragments": 672, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__UBA695", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009885995.1", "gtdb_species": "s__VFJQ01 sp009885995", "ani": 75.7786, "matched_fragments": 55, "total_fragments": 672, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__VFJQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.146, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 25.0, "optimum_ph": 5.5, "genome_size": 7848700.0, "gc_content": 61.1, "coding_genes": null, "rRNA16S_genes": 1.0, "tRNA_genes": 58.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Chthoniobacterales", "f__CAKUMP01", "g__DYRR01", "s__DYRR01 sp020718605" ], "_genome_taxon": [ "Chthoniobacter", "flavus", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Chthoniobacterales", "f__CAKUMP01", "g__DYRR01", "s__DYRR01 sp020718605", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Chthoniobacterales", "CAKUMP01", "DYRR01", "DYRR01", "sp020718605" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" }, { "id": "MEO_0000116", "label": "biofilm" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }