{ "type": "genome", "identifier": "GCA_020720045.1", "organism": "Sorangium cellulosum", "title": "Sorangium cellulosum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020720045.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209547", "wgs_master": "DYPH00000000.1", "refseq_category": "na", "taxid": "56", "species_taxid": "56", "organism_name": "Sorangium cellulosum", "infraspecific_name": "", "isolate": "SulCav_GS09_5_65_23", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2072004v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/720/045/GCA_020720045.1_ASM2072004v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sorangium cellulosum" ], "sample_taxid": [ "56" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Frasassi cave" ], "sample_host_location_id": [], "data_size": "1.773 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.09, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6341680", "Number of Sequences": "358", "Longest Sequences (bp)": "110527", "N50 (bp)": "36616", "Gap Ratio (%)": "0.102496", "GCcontent (%)": "65.0", "Number of CDSs": "5372", "Average Protein Length": "344.9", "Coding Ratio (%)": "87.6", "Number of rRNAs": "0", "Number of tRNAs": "58", "Number of CRISPRs": "12" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Labilithrix luteola", "strain": "strain=DSM 27648", "accession": "GCA_001263205.1", "taxid": 1391654, "species_taxid": 1391654, "relation_to_type": "type", "validated": true, "ani": 75.9947, "matched_fragments": 254, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium fumosum", "strain": "strain=DSM 14668", "accession": "GCA_005144585.1", "taxid": 889272, "species_taxid": 889272, "relation_to_type": "neotype", "validated": true, "ani": 75.2379, "matched_fragments": 234, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, 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true, "ani": 74.9539, "matched_fragments": 237, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=TR7-09", "accession": "GCA_000747175.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 74.9368, "matched_fragments": 65, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 74.9222, "matched_fragments": 67, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas flava", "strain": "strain=DSM 18980", "accession": "GCA_000426685.1", "taxid": 415849, "species_taxid": 415849, "relation_to_type": "type", "validated": true, "ani": 74.8067, "matched_fragments": 86, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus lusitanus", "strain": "strain=CECT 7306", "accession": "GCA_003751265.1", "taxid": 763993, "species_taxid": 763993, "relation_to_type": "type", "validated": true, "ani": 74.7859, "matched_fragments": 130, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas variicoloris", "strain": "strain=DSM 15731", "accession": "GCA_000382285.1", "taxid": 254408, "species_taxid": 254408, "relation_to_type": "type", "validated": true, "ani": 74.7426, "matched_fragments": 87, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura decatromicini", "strain": "strain=CYP1-5", "accession": "GCA_008121305.1", "taxid": 2604572, "species_taxid": 2604572, "relation_to_type": "type", "validated": true, "ani": 74.7135, "matched_fragments": 133, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium siamense", "strain": "strain=NBRC 106093", "accession": "GCA_016862795.1", "taxid": 685454, "species_taxid": 685454, "relation_to_type": "type", "validated": true, "ani": 74.6931, "matched_fragments": 179, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 74.6767, "matched_fragments": 97, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 74.6618, "matched_fragments": 69, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=JCM 1379", "accession": "GCA_014646835.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 74.6472, "matched_fragments": 62, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=DSM 20427", "accession": "GCA_006716815.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 74.6472, "matched_fragments": 62, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=NBRC 14135", "accession": "GCA_006539445.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 74.6464, "matched_fragments": 62, "total_fragments": 1928, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.09, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013298325.1", "gtdb_species": "s__JAAFHJ01 sp013298325", "ani": 92.4229, "matched_fragments": 1204, "total_fragments": 1928, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__JAAFHJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016712525.1", "gtdb_species": "s__JAAFHV01 sp016712525", "ani": 76.4075, "matched_fragments": 286, "total_fragments": 1928, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__JAAFHV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001263205.1", "gtdb_species": "s__Labilithrix 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