{ "type": "genome", "identifier": "GCA_020721205.1", "organism": "Prochloron sp. SulCav_FS08_3_32_3330", "title": "Prochloron sp. SulCav_FS08_3_32_3330", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020721205.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209493", "wgs_master": "DYNF00000000.1", "refseq_category": "na", "taxid": "2886921", "species_taxid": "2886921", "organism_name": "Prochloron sp. SulCav_FS08_3_32_3330", "infraspecific_name": "", "isolate": "SulCav_FS08_3_32_3330", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2072120v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/721/205/GCA_020721205.1_ASM2072120v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Prochloron sp. SulCav_FS08_3_32_3330" ], "sample_taxid": [ "2886921" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Frasassi cave" ], "sample_host_location_id": [], "data_size": "1.305 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.45, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4730349", "Number of Sequences": "209", "Longest Sequences (bp)": "89346", "N50 (bp)": "33203", "Gap Ratio (%)": "0.084560", "GCcontent (%)": "32.4", "Number of CDSs": "4262", "Average Protein Length": "309.0", "Coding Ratio (%)": "83.5", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stanieria cyanosphaera", "strain": "strain=PCC 7437", "accession": "GCA_000317575.1", "taxid": 102116, "species_taxid": 102116, "relation_to_type": "type", "validated": true, "ani": 75.7965, "matched_fragments": 121, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crocosphaera watsonii", "strain": "strain=WH 8501", "accession": "GCA_000167195.1", "taxid": 263511, "species_taxid": 263511, "relation_to_type": "suspected-type", "validated": true, "ani": 75.5805, "matched_fragments": 98, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crocosphaera subtropica", "strain": "strain=ATCC 51142", "accession": "GCA_000017845.1", "taxid": 2546360, "species_taxid": 2546360, "relation_to_type": "type", "validated": true, "ani": 75.4941, "matched_fragments": 125, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crocosphaera chwakensis", "strain": "strain=CCY0110", "accession": "GCA_000169335.1", "taxid": 2546361, "species_taxid": 2546361, "relation_to_type": "type", "validated": true, "ani": 75.4618, "matched_fragments": 131, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gloeothece citriformis", "strain": "strain=PCC 7424", "accession": "GCA_000021825.1", "taxid": 2546356, "species_taxid": 2546356, "relation_to_type": "type", "validated": true, "ani": 75.3657, "matched_fragments": 141, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Scytonema hofmannii", "strain": "strain=PCC 7110", "accession": "GCA_000346485.2", "taxid": 34078, "species_taxid": 34078, "relation_to_type": "type", "validated": true, "ani": 75.1867, "matched_fragments": 79, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Okeania hirsuta", "strain": "strain=PAB10Feb10-1", "accession": "GCA_003838195.1", "taxid": 1458930, "species_taxid": 1458930, "relation_to_type": "type", "validated": true, "ani": 75.1594, "matched_fragments": 110, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Waterburya agarophytonicola", "strain": "strain=KI4", "accession": "GCA_020640915.1", "taxid": 2886916, "species_taxid": 2886916, "relation_to_type": "type", "validated": true, "ani": 75.1324, "matched_fragments": 62, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oscillatoria acuminata", "strain": "strain=PCC 6304", "accession": "GCA_000317105.1", "taxid": 118323, "species_taxid": 118323, "relation_to_type": "type", "validated": true, "ani": 74.9602, "matched_fragments": 54, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dulcicalothrix desertica", "strain": "strain=PCC 7102", "accession": "GCA_007830875.1", "taxid": 32056, "species_taxid": 32056, "relation_to_type": "type", "validated": true, "ani": 74.8753, "matched_fragments": 69, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dulcicalothrix desertica", "strain": "strain=PCC 7102", "accession": "GCA_003991905.1", "taxid": 32056, "species_taxid": 32056, "relation_to_type": "type", "validated": true, "ani": 74.8719, "matched_fragments": 68, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.45, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000332235.1", "gtdb_species": "s__Geminocystis herdmanii", "ani": 76.0073, "matched_fragments": 163, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__Geminocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016743215.1", "gtdb_species": "s__Geminocystis sp016743215", "ani": 75.7776, "matched_fragments": 174, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__Geminocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003864295.1", "gtdb_species": "s__Aphanothece_B sacrum", "ani": 75.687, "matched_fragments": 151, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae_A;g__Aphanothece_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001548095.1", "gtdb_species": "s__Geminocystis sp001548095", "ani": 75.6628, "matched_fragments": 171, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__Geminocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001548115.1", "gtdb_species": "s__Geminocystis sp001548115", "ani": 75.4957, "matched_fragments": 162, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__Geminocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002368355.1", "gtdb_species": "s__Pleurocapsa sp002368355", "ani": 75.4704, "matched_fragments": 95, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Xenococcaceae;g__Pleurocapsa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000169335.1", "gtdb_species": "s__Crocosphaera chwakensis", "ani": 75.4618, "matched_fragments": 131, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae_A;g__Crocosphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009711935.1", "gtdb_species": "s__Dolichospermum sp009711935", "ani": 75.4524, "matched_fragments": 103, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002934005.1", "gtdb_species": "s__Cuspidothrix issatschenkoi", "ani": 75.4475, "matched_fragments": 92, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Cuspidothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.84", "min_intra_species_ani": "95.84", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017312365.1", "gtdb_species": "s__Chroococcus sp017312365", "ani": 75.4348, "matched_fragments": 92, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Chroococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002368075.1", "gtdb_species": "s__Sphaerospermopsis kisseleviana_A", "ani": 75.4328, "matched_fragments": 106, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Sphaerospermopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.53", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000021825.1", "gtdb_species": "s__Gloeothece citriformis", "ani": 75.3993, "matched_fragments": 132, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Gloeothece", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003249095.1", "gtdb_species": "s__Snowella sp003249095", "ani": 75.3451, "matched_fragments": 75, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae_A;g__Snowella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012516395.1", "gtdb_species": "s__Dolichospermum sp000312705", "ani": 75.3359, "matched_fragments": 99, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dolichospermum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.37", "min_intra_species_ani": "95.92", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.80", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCA_015207585.1", "gtdb_species": "s__LEGE-06147 sp015207585", "ani": 75.2743, "matched_fragments": 61, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Xenococcaceae;g__LEGE-06147", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011088145.1", "gtdb_species": "s__JAALKG01 sp011088145", "ani": 75.242, "matched_fragments": 77, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__JAALKG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014697615.1", "gtdb_species": "s__Nostoc_B sp014697615", "ani": 75.2404, "matched_fragments": 92, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900659865.1", "gtdb_species": "s__Hyella patelloides", "ani": 75.1937, "matched_fragments": 109, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Xenococcaceae;g__Hyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003007785.1", "gtdb_species": "s__Chroococcus hegewaldii", "ani": 75.0546, "matched_fragments": 98, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Chroococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000817785.2", "gtdb_species": "s__Hassallia byssoidea", "ani": 75.0353, "matched_fragments": 64, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Hassallia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000332055.1", "gtdb_species": "s__Xenococcus sp000332055", "ani": 75.0321, "matched_fragments": 82, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Xenococcaceae;g__Xenococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013393945.1", "gtdb_species": "s__Trichormus sp013393945", "ani": 75.0232, "matched_fragments": 60, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Trichormus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016888125.1", "gtdb_species": "s__CCY15215 sp016888125", "ani": 74.9533, "matched_fragments": 63, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Spirulinaceae;g__CCY15215", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__Cyanobacteriales", "f__DYNF01", "g__DYNF01", "s__DYNF01 sp020721205" ], "_genome_taxon": [ "Prochloron", "sp.", "SulCav_FS08_3_32_3330", "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__Cyanobacteriales", "f__DYNF01", "g__DYNF01", "s__DYNF01 sp020721205", "Bacteria", "Cyanobacteriota", "Cyanobacteriia", "Cyanobacteriales", "DYNF01", "DYNF01", "DYNF01", "sp020721205" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" }, { "id": "MEO_0000116", "label": "biofilm" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }