{ "type": "genome", "identifier": "GCA_020721545.1", "organism": "Flavobacterium psychrophilum", "title": "Flavobacterium psychrophilum", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020721545.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209476", "wgs_master": "DYMO00000000.1", "refseq_category": "na", "taxid": "96345", "species_taxid": "96345", "organism_name": "Flavobacterium psychrophilum", "infraspecific_name": "", "isolate": "SulCav_FS06-10_31_579", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2072154v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/721/545/GCA_020721545.1_ASM2072154v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium psychrophilum" ], "sample_taxid": [ "96345" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Frasassi cave" ], "sample_host_location_id": [], "data_size": "0.611 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.64, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2177225", "Number of Sequences": "269", "Longest Sequences (bp)": "54283", "N50 (bp)": "16000", "Gap Ratio (%)": "0.403909", "GCcontent (%)": "31.3", "Number of CDSs": "1802", "Average Protein Length": "322.6", "Coding Ratio (%)": "80.1", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium swingsii", "strain": "strain=DSM 21789", "accession": "GCA_900111965.1", "taxid": 498292, "species_taxid": 498292, "relation_to_type": "type", "validated": true, "ani": 77.5369, "matched_fragments": 203, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=DSM 3660", "accession": "GCA_900101925.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 77.5049, "matched_fragments": 189, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=ATCC 49418", "accession": "GCA_002217405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 77.4783, "matched_fragments": 192, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=FPG3", "accession": "GCA_000754405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 77.4521, "matched_fragments": 191, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.3309, "matched_fragments": 125, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lutivivi", "strain": "strain=CGMCC 1.15347", "accession": "GCA_014642275.1", "taxid": 1677894, "species_taxid": 1677894, "relation_to_type": "type", "validated": true, "ani": 77.0202, "matched_fragments": 116, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 77.0005, "matched_fragments": 92, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 76.9567, "matched_fragments": 106, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 76.9514, "matched_fragments": 112, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 76.9351, "matched_fragments": 108, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 76.9223, "matched_fragments": 121, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 76.9014, "matched_fragments": 117, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 76.8393, "matched_fragments": 100, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 76.836, "matched_fragments": 105, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 76.8299, "matched_fragments": 101, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 76.8136, "matched_fragments": 106, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium terrae", "strain": "strain=DSM 18829", "accession": "GCA_900142035.1", "taxid": 415425, "species_taxid": 415425, "relation_to_type": "type", "validated": true, "ani": 76.8001, "matched_fragments": 126, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 76.7927, "matched_fragments": 116, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 76.7752, "matched_fragments": 88, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 76.7101, "matched_fragments": 102, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 76.7086, "matched_fragments": 125, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=NBRC 15030", "accession": "GCA_007990815.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.6961, "matched_fragments": 109, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=ATCC 35035", "accession": "GCA_002217205.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.6584, "matched_fragments": 114, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 76.6425, "matched_fragments": 140, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.6245, "matched_fragments": 116, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium segetis", "strain": "strain=DSM 19741", "accession": "GCA_900129575.1", "taxid": 271157, "species_taxid": 271157, "relation_to_type": "type", "validated": true, "ani": 76.5791, "matched_fragments": 92, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tangerinum", "strain": "strain=YIM 102701-2", "accession": "GCA_003865405.1", "taxid": 2488728, "species_taxid": 2488728, "relation_to_type": "type", "validated": true, "ani": 76.464, "matched_fragments": 79, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydatis", "strain": "strain=DSM 2063", "accession": "GCA_000737695.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 76.4403, "matched_fragments": 121, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 76.4368, "matched_fragments": 132, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, "relation_to_type": "type", "validated": true, "ani": 76.1422, "matched_fragments": 86, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.64, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001464475.1", "gtdb_species": "s__Flavobacterium sp001464475", "ani": 77.8399, "matched_fragments": 142, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013298525.1", "gtdb_species": "s__Flavobacterium sp013298525", "ani": 77.8184, "matched_fragments": 142, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903888655.1", "gtdb_species": "s__Flavobacterium sp903888655", "ani": 77.7656, "matched_fragments": 68, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000757385.1", "gtdb_species": "s__Flavobacterium aquatile", "ani": 77.5658, "matched_fragments": 146, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900111965.1", "gtdb_species": "s__Flavobacterium swingsii", "ani": 77.5369, "matched_fragments": 203, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002217405.1", "gtdb_species": "s__Flavobacterium psychrophilum", "ani": 77.4766, "matched_fragments": 192, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 157, "status": "-" }, { "accession": "GCA_003525665.1", "gtdb_species": "s__Flavobacterium sp003525665", "ani": 77.4426, "matched_fragments": 132, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903838055.1", "gtdb_species": "s__Flavobacterium sp903838055", "ani": 77.0985, "matched_fragments": 144, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003634825.1", "gtdb_species": "s__Flavobacterium sp003634825", "ani": 77.0751, "matched_fragments": 112, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004339525.1", "gtdb_species": "s__Flavobacterium sp004339525", "ani": 76.9361, "matched_fragments": 122, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007097265.1", "gtdb_species": "s__Flavobacterium gawalongense", "ani": 76.9223, "matched_fragments": 121, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_008806775.1", "gtdb_species": "s__Flavobacterium luteum", "ani": 76.9014, "matched_fragments": 117, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142035.1", "gtdb_species": "s__Flavobacterium terrae", "ani": 76.8372, "matched_fragments": 124, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902804475.1", "gtdb_species": "s__Flavobacterium bizetiae", "ani": 76.836, "matched_fragments": 105, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003097635.1", "gtdb_species": "s__Flavobacterium psychrotolerans", "ani": 76.7958, "matched_fragments": 86, "total_fragments": 589, "gtdb_taxonomy": 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