{ "type": "genome", "identifier": "GCA_020722365.1", "organism": "Thermoflexus sp.", "title": "Thermoflexus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020722365.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209434", "wgs_master": "DYKY00000000.1", "refseq_category": "na", "taxid": "1969742", "species_taxid": "1969742", "organism_name": "Thermoflexus sp.", "infraspecific_name": "", "isolate": "SulCav_AS07-7_59_19", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2072236v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/722/365/GCA_020722365.1_ASM2072236v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermoflexus sp." ], "sample_taxid": [ "1969742" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Grotta Nuova del Rio Garrafo cave" ], "sample_host_location_id": [], "data_size": "1.128 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3953147", "Number of Sequences": "249", "Longest Sequences (bp)": "105285", "N50 (bp)": "22481", "Gap Ratio (%)": "0.341753", "GCcontent (%)": "59.1", "Number of CDSs": "3324", "Average Protein Length": "334.1", "Coding Ratio (%)": "84.3", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aggregatilinea lenta", "strain": "strain=MO-CFX2", "accession": "GCA_003569045.1", "taxid": 913108, "species_taxid": 913108, "relation_to_type": "type", "validated": true, "ani": 75.342, "matched_fragments": 60, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix coeruleofusca", "strain": "strain=DSM 43679", "accession": "GCA_017876325.1", "taxid": 33919, "species_taxid": 33919, "relation_to_type": "type", "validated": true, "ani": 74.8543, "matched_fragments": 55, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix coeruleofusca", "strain": "strain=JCM 3313", "accession": "GCA_014648515.1", "taxid": 33919, "species_taxid": 33919, "relation_to_type": "type", "validated": true, "ani": 74.8394, "matched_fragments": 58, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenulispora rubra", "strain": "strain=DSM 44948", "accession": "GCA_015356825.1", "taxid": 280293, "species_taxid": 280293, "relation_to_type": "type", "validated": true, "ani": 74.697, "matched_fragments": 52, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 74.6408, "matched_fragments": 53, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011370065.1", "gtdb_species": "s__DSWT01 sp011370065", "ani": 83.5008, "matched_fragments": 923, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__SLSP01;g__DSWT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016934645.1", "gtdb_species": "s__DSWT01 sp016934645", "ani": 81.9129, "matched_fragments": 729, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__SLSP01;g__DSWT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007130345.1", "gtdb_species": "s__SLSP01 sp007130345", "ani": 77.0521, "matched_fragments": 147, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__SLSP01;g__SLSP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.76", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_015486785.1", "gtdb_species": "s__S014-19 sp015486785", "ani": 76.359, "matched_fragments": 77, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__SLSP01;g__S014-19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018055515.1", "gtdb_species": "s__JAAZNO01 sp018055515", "ani": 76.1807, "matched_fragments": 103, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__SLSP01;g__JAAZNO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009908585.1", "gtdb_species": "s__JAAAOZ01 sp009908585", "ani": 76.1079, "matched_fragments": 69, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__SLSP01;g__JAAAOZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012798275.1", "gtdb_species": "s__JAAZNO01 sp012798275", "ani": 75.9823, "matched_fragments": 78, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__SLSP01;g__JAAZNO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011046405.1", "gtdb_species": "s__DSAR01 sp011046405", "ani": 75.7819, "matched_fragments": 60, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__B4-G1;g__DSAR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014383605.1", "gtdb_species": "s__NIOZ-UU15 sp014383605", "ani": 75.3106, "matched_fragments": 60, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__UBA3071;f__UBA3071;g__NIOZ-UU15", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003154115.1", "gtdb_species": "s__Fen-1058 sp003154115", "ani": 75.0256, "matched_fragments": 58, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Fen-1058;g__Fen-1058", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__B4-G1", "f__SLSP01", "g__DSWT01", "s__DSWT01 sp020722365" ], "_genome_taxon": [ "Thermoflexus", "sp.", "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__B4-G1", "f__SLSP01", "g__DSWT01", "s__DSWT01 sp020722365", "Bacteria", "Chloroflexota", "Anaerolineae", "B4-G1", "SLSP01", "DSWT01", "DSWT01", "sp020722365" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" }, { "id": "MEO_0000116", "label": "biofilm" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }