{
    "type": "genome",
    "identifier": "GCA_020722565.1",
    "organism": "Rikenella microfusus",
    "title": "Rikenella microfusus",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University Duisburg-Essen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020722565.1",
        "bioproject": "PRJNA767587",
        "biosample": "SAMN22209424",
        "wgs_master": "DYKO00000000.1",
        "refseq_category": "na",
        "taxid": "28139",
        "species_taxid": "28139",
        "organism_name": "Rikenella microfusus",
        "infraspecific_name": "",
        "isolate": "SulCav_AS07-7_2_41_48",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/02",
        "asm_name": "ASM2072256v1",
        "submitter": "University Duisburg-Essen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/722/565/GCA_020722565.1_ASM2072256v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-02",
    "dateModified": "2021-11-02",
    "datePublished": "2021-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rikenella microfusus"
        ],
        "sample_taxid": [
            "28139"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Grotta Nuova del Rio Garrafo cave"
        ],
        "sample_host_location_id": [],
        "data_size": "0.811 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2839912",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "254708",
        "N50 (bp)": "168178",
        "Gap Ratio (%)": "0.028170",
        "GCcontent (%)": "40.5",
        "Number of CDSs": "2321",
        "Average Protein Length": "364.8",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tenuifilum thalassicum",
                "strain": "strain=38H-str",
                "accession": "GCA_013265555.1",
                "taxid": 2590900,
                "species_taxid": 2590900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2842,
                "matched_fragments": 175,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018056955.1",
                "gtdb_species": "s__Tenuifilum sp018056955",
                "ani": 77.5054,
                "matched_fragments": 228,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tenuifilaceae;g__Tenuifilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.52",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011045955.1",
                "gtdb_species": "s__Tenuifilum sp011045955",
                "ani": 77.4182,
                "matched_fragments": 222,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tenuifilaceae;g__Tenuifilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011367975.1",
                "gtdb_species": "s__Tenuifilum sp011367975",
                "ani": 77.397,
                "matched_fragments": 248,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tenuifilaceae;g__Tenuifilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013265555.1",
                "gtdb_species": "s__Tenuifilum thalassicum",
                "ani": 77.2842,
                "matched_fragments": 175,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tenuifilaceae;g__Tenuifilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001603415.1",
                "gtdb_species": "s__Tenuifilum sp001603415",
                "ani": 76.8171,
                "matched_fragments": 188,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tenuifilaceae;g__Tenuifilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002383425.1",
                "gtdb_species": "s__Tenuifilum sp002383425",
                "ani": 76.8006,
                "matched_fragments": 179,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tenuifilaceae;g__Tenuifilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2880076.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tenuifilaceae",
        "g__Tenuifilum",
        "s__Tenuifilum sp020722565"
    ],
    "_genome_taxon": [
        "Rikenella",
        "microfusus",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tenuifilaceae",
        "g__Tenuifilum",
        "s__Tenuifilum sp020722565",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Tenuifilaceae",
        "Tenuifilum",
        "Tenuifilum",
        "sp020722565"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        },
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}