{ "type": "genome", "identifier": "GCA_020741995.1", "organism": "Enterococcus gallinarum", "title": "Enterococcus gallinarum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020741995.1", "bioproject": "PRJNA543206", "biosample": "SAMN21194369", "wgs_master": "DYXV00000000.1", "refseq_category": "na", "taxid": "1353", "species_taxid": "1353", "organism_name": "Enterococcus gallinarum", "infraspecific_name": "", "isolate": "ChiHduod17-1371", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/04", "asm_name": "ASM2074199v1", "submitter": "Quadram Institutte", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/741/995/GCA_020741995.1_ASM2074199v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-04", "dateModified": "2021-11-04", "datePublished": "2021-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus gallinarum" ], "sample_taxid": [ "1353" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hunan" ], "sample_host_location_id": [], "data_size": "0.847 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2961231", "Number of Sequences": "60", "Longest Sequences (bp)": "159273", "N50 (bp)": "72153", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.9", "Number of CDSs": "2748", "Average Protein Length": "306.6", "Coding Ratio (%)": "85.4", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus gallinarum", "strain": "strain=NBRC 100675", "accession": "GCA_001544275.1", "taxid": 1353, "species_taxid": 1353, "relation_to_type": "suspected-type", "validated": true, "ani": 97.735, "matched_fragments": 861, "total_fragments": 960, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus gallinarum", "strain": "strain=DSM 24841", "accession": "GCA_001886155.1", "taxid": 1353, "species_taxid": 1353, "relation_to_type": "suspected-type", "validated": true, "ani": 97.6765, "matched_fragments": 861, "total_fragments": 960, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus gallinarum", "strain": "strain=NCTC12359", "accession": "GCA_900447935.1", 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"relation_to_type": "type", "validated": true, "ani": 77.3534, "matched_fragments": 96, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus wangshanyuanii", "strain": "strain=MN05", "accession": "GCA_002197645.1", "taxid": 2005703, "species_taxid": 2005703, "relation_to_type": "type", "validated": true, "ani": 77.2998, "matched_fragments": 101, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001544275.1", "gtdb_species": "s__Enterococcus_D gallinarum", "ani": 97.7323, "matched_fragments": 862, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.85", 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