{ "type": "genome", "identifier": "GCA_020832085.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020832085.1", "bioproject": "PRJNA377096", "biosample": "SAMN17266199", "wgs_master": "JAFIFJ000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "coassembly_bin.6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/10", "asm_name": "ASM2083208v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/832/085/GCA_020832085.1_ASM2083208v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-10", "dateModified": "2021-11-10", "datePublished": "2021-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "1.293 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.91, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4640214", "Number of Sequences": "173", "Longest Sequences (bp)": "122787", "N50 (bp)": "41672", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "4037", "Average Protein Length": "332.6", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 76.3648, "matched_fragments": 136, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 76.3645, "matched_fragments": 136, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas azotifigens", "strain": "strain=DSM 17556", "accession": "GCA_000425625.1", "taxid": 291995, "species_taxid": 291995, "relation_to_type": "type", "validated": true, "ani": 76.3456, "matched_fragments": 138, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 76.2895, "matched_fragments": 103, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 76.1963, "matched_fragments": 141, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 76.1926, "matched_fragments": 139, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 76.1704, "matched_fragments": 155, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 76.1432, "matched_fragments": 126, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 76.125, "matched_fragments": 138, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 76.1123, "matched_fragments": 110, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 76.0624, "matched_fragments": 153, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 76.0505, "matched_fragments": 124, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 76.0505, "matched_fragments": 128, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": true, "ani": 76.0223, "matched_fragments": 123, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": "GCA_015356855.1", "taxid": 172371, "species_taxid": 172371, "relation_to_type": "type", "validated": true, "ani": 75.9754, "matched_fragments": 116, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 75.967, "matched_fragments": 150, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kuykendallii", "strain": "strain=NRRL B-59562", "accession": "GCA_900106975.1", "taxid": 1007099, "species_taxid": 1007099, "relation_to_type": "type", "validated": true, "ani": 75.9631, "matched_fragments": 112, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 75.9411, "matched_fragments": 146, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 75.9293, "matched_fragments": 148, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 75.9142, "matched_fragments": 156, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=FDAARGOS_877", "accession": "GCA_016028515.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 75.8871, "matched_fragments": 112, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas montanilacus", "strain": "strain=PYC7W", "accession": "GCA_003336675.1", "taxid": 2282305, "species_taxid": 2282305, "relation_to_type": "type", "validated": true, "ani": 75.8756, "matched_fragments": 92, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellella denitrificans", "strain": "strain=ZD1", "accession": "GCA_002237365.1", "taxid": 347534, "species_taxid": 347534, "relation_to_type": "type", "validated": true, "ani": 75.8741, "matched_fragments": 115, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_002890935.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 75.8716, "matched_fragments": 108, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 75.7928, "matched_fragments": 87, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 75.784, "matched_fragments": 124, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangrovi", "strain": "strain=TC11", "accession": "GCA_003052585.1", "taxid": 2161748, "species_taxid": 2161748, "relation_to_type": "type", "validated": true, "ani": 75.6969, "matched_fragments": 110, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineobactrum salinum", "strain": "strain=M2", "accession": "GCA_010669285.1", "taxid": 2708301, "species_taxid": 2708301, "relation_to_type": "type", "validated": true, "ani": 75.6309, "matched_fragments": 84, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.6224, "matched_fragments": 108, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium aestuarii", "strain": "strain=ST58-10", "accession": "GCA_001651805.1", "taxid": 1821621, "species_taxid": 1821621, "relation_to_type": "type", "validated": true, "ani": 75.6118, "matched_fragments": 59, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas eucalypticola", "strain": "strain=NP-1", "accession": "GCA_013374995.1", "taxid": 2599595, "species_taxid": 2599595, "relation_to_type": "type", "validated": true, "ani": 75.6023, "matched_fragments": 109, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ilicicola", "strain": "strain=DSM 19980", "accession": "GCA_900128925.1", "taxid": 480814, "species_taxid": 480814, "relation_to_type": "type", "validated": true, "ani": 75.5982, "matched_fragments": 92, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lutaoensis", "strain": "strain=T5054", "accession": "GCA_001981305.1", "taxid": 135739, "species_taxid": 135739, "relation_to_type": "type", "validated": true, "ani": 75.5429, "matched_fragments": 91, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas panaciterrae", "strain": "strain=Gsoil 068", "accession": "GCA_020511115.1", "taxid": 363885, "species_taxid": 363885, "relation_to_type": "type", "validated": true, "ani": 75.3778, "matched_fragments": 68, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_900116825.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 75.298, "matched_fragments": 68, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.91, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_007130155.1", "gtdb_species": "s__SLTB01 sp007130155", "ani": 84.2624, "matched_fragments": 906, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__HTCC2089;g__SLTB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007122315.1", "gtdb_species": "s__SLTB01 sp007122315", "ani": 79.9412, "matched_fragments": 639, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__HTCC2089;g__SLTB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_007694905.1", "gtdb_species": "s__SLTB01 sp007694905", "ani": 79.7295, "matched_fragments": 703, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__HTCC2089;g__SLTB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007131295.1", "gtdb_species": "s__SLTB01 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87, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425625.1", "gtdb_species": "s__Pseudomonas_N azotifigens", "ani": 76.3274, "matched_fragments": 142, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_N", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017255185.1", "gtdb_species": "s__Parahaliea mediterranea_A", "ani": 76.3253, "matched_fragments": 133, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016779385.1", "gtdb_species": "s__RGAU01 sp016779385", "ani": 76.3143, "matched_fragments": 95, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__HTCC2089;g__RGAU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016779325.1", "gtdb_species": "s__RGAU01 sp016779325", "ani": 76.2808, "matched_fragments": 96, "total_fragments": 1457, "gtdb_taxonomy": 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