{ "type": "genome", "identifier": "GCA_020832135.1", "organism": "Clostridiaceae bacterium", "title": "Clostridiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020832135.1", "bioproject": "PRJNA377096", "biosample": "SAMN17266196", "wgs_master": "JAFIFG000000000.1", "refseq_category": "na", "taxid": "1898204", "species_taxid": "1898204", "organism_name": "Clostridiaceae bacterium", "infraspecific_name": "", "isolate": "coassembly_bin.26", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/10", "asm_name": "ASM2083213v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/832/135/GCA_020832135.1_ASM2083213v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-10", "dateModified": "2021-11-10", "datePublished": "2021-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridiaceae bacterium" ], "sample_taxid": [ "1898204" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "1.122 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4001185", "Number of Sequences": "155", "Longest Sequences (bp)": "196282", "N50 (bp)": "44085", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.1", "Number of CDSs": "3916", "Average Protein Length": "281.7", "Coding Ratio (%)": "82.7", "Number of rRNAs": "4", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alkaliphilus metalliredigens", "strain": "strain=QYMF", "accession": "GCA_000016985.1", "taxid": 208226, "species_taxid": 208226, "relation_to_type": "type", "validated": true, "ani": 78.1002, "matched_fragments": 177, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronincola ferrireducens", "strain": "strain=DSM 18346", "accession": "GCA_900100845.1", "taxid": 393762, "species_taxid": 393762, "relation_to_type": "type", "validated": true, "ani": 77.7177, "matched_fragments": 256, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium aceticum", "strain": "strain=DSM 1496", "accession": "GCA_001042715.1", "taxid": 84022, "species_taxid": 84022, "relation_to_type": "type", "validated": true, "ani": 77.666, "matched_fragments": 240, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium aceticum", "strain": "strain=DSM 1496", "accession": "GCA_000949285.1", "taxid": 84022, "species_taxid": 84022, "relation_to_type": "type", "validated": true, "ani": 77.5842, "matched_fragments": 233, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronincola peptidivorans", "strain": "strain=DSM 18979", "accession": "GCA_900111615.1", "taxid": 426128, "species_taxid": 426128, "relation_to_type": "type", "validated": true, "ani": 77.5695, "matched_fragments": 233, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium formicaceticum", "strain": "strain=DSM 92", "accession": "GCA_002080475.1", "taxid": 1497, "species_taxid": 1497, "relation_to_type": "type", "validated": true, "ani": 77.5516, "matched_fragments": 230, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerovirgula multivorans", "strain": "strain=SCA", "accession": "GCA_900188145.1", "taxid": 312168, "species_taxid": 312168, "relation_to_type": "type", "validated": true, "ani": 77.5353, "matched_fragments": 280, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium formicaceticum", "strain": "strain=ATCC 27076", "accession": "GCA_001854185.1", "taxid": 1497, "species_taxid": 1497, "relation_to_type": "type", "validated": true, "ani": 77.4862, "matched_fragments": 229, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkaliphilus transvaalensis", "strain": "strain=ATCC 700919", "accession": "GCA_000621485.1", "taxid": 114628, "species_taxid": 114628, "relation_to_type": "type", "validated": true, "ani": 76.5748, "matched_fragments": 105, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkaliphilus flagellatus", "strain": "strain=MSJ-5", "accession": "GCA_018919215.1", "taxid": 2841507, "species_taxid": 2841507, "relation_to_type": "type", "validated": true, "ani": 76.4064, "matched_fragments": 104, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maledivibacter halophilus", "strain": "strain=M1", "accession": "GCA_900167445.1", "taxid": 36842, "species_taxid": 36842, "relation_to_type": "type", "validated": true, "ani": 75.4723, "matched_fragments": 73, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000016985.1", "gtdb_species": "s__Alkaliphilus_A metalliredigens", "ani": 78.0667, "matched_fragments": 178, 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