{
    "type": "genome",
    "identifier": "GCA_020832145.1",
    "organism": "Alkalibacterium sp.",
    "title": "Alkalibacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Calgary",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020832145.1",
        "bioproject": "PRJNA377096",
        "biosample": "SAMN17266195",
        "wgs_master": "JAFIFF000000000.1",
        "refseq_category": "na",
        "taxid": "1872447",
        "species_taxid": "1872447",
        "organism_name": "Alkalibacterium sp.",
        "infraspecific_name": "",
        "isolate": "Super_Day6_Bin.28",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/10",
        "asm_name": "ASM2083214v1",
        "submitter": "University of Calgary",
        "gbrs_paired_asm": "GCF_020832145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/832/145/GCA_020832145.1_ASM2083214v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-10",
    "dateModified": "2021-11-10",
    "datePublished": "2021-11-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkalibacterium sp."
        ],
        "sample_taxid": [
            "1872447"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Calgary"
        ],
        "sample_host_location_id": [],
        "data_size": "0.624 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 90.51,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2158922",
        "Number of Sequences": "179",
        "Longest Sequences (bp)": "75829",
        "N50 (bp)": "17829",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.6",
        "Number of CDSs": "1907",
        "Average Protein Length": "303.0",
        "Coding Ratio (%)": "80.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "8",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Alkalibacterium thalassium",
                "strain": "strain=DSM 19181",
                "accession": "GCA_900101165.1",
                "taxid": 426701,
                "species_taxid": 426701,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5085,
                "matched_fragments": 141,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium pelagium",
                "strain": "strain=NBRC 103242",
                "accession": "GCA_007991315.1",
                "taxid": 426702,
                "species_taxid": 426702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4452,
                "matched_fragments": 156,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium pelagium",
                "strain": "strain=DSM 19183",
                "accession": "GCA_900109325.1",
                "taxid": 426702,
                "species_taxid": 426702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3513,
                "matched_fragments": 159,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium olivapovliticus",
                "strain": "strain=DSM 13175",
                "accession": "GCA_003003275.1",
                "taxid": 99907,
                "species_taxid": 99907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0299,
                "matched_fragments": 168,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium gilvum",
                "strain": "strain=DSM 25751",
                "accession": "GCA_900109085.1",
                "taxid": 1130080,
                "species_taxid": 1130080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0248,
                "matched_fragments": 64,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium putridalgicola",
                "strain": "strain=DSM 19182",
                "accession": "GCA_900109825.1",
                "taxid": 426703,
                "species_taxid": 426703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9455,
                "matched_fragments": 108,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium putridalgicola",
                "strain": "strain=NBRC 103243",
                "accession": "GCA_007988845.1",
                "taxid": 426703,
                "species_taxid": 426703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9165,
                "matched_fragments": 107,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium kapii",
                "strain": "strain=NBRC 103247",
                "accession": "GCA_007988865.1",
                "taxid": 426704,
                "species_taxid": 426704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3488,
                "matched_fragments": 82,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 90.51,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_007692455.1",
                "gtdb_species": "s__Alkalibacterium sp007692455",
                "ani": 98.9792,
                "matched_fragments": 534,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900101165.1",
                "gtdb_species": "s__Alkalibacterium thalassium",
                "ani": 78.5085,
                "matched_fragments": 141,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900109325.1",
                "gtdb_species": "s__Alkalibacterium pelagium",
                "ani": 78.3513,
                "matched_fragments": 159,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000585255.1",
                "gtdb_species": "s__Alkalibacterium sp000585255",
                "ani": 78.0472,
                "matched_fragments": 150,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003003275.1",
                "gtdb_species": "s__Alkalibacterium olivapovliticus",
                "ani": 78.0299,
                "matched_fragments": 168,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900109085.1",
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                "ani": 78.0078,
                "matched_fragments": 65,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900109825.1",
                "gtdb_species": "s__Alkalibacterium putridalgicola",
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                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
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                "min_intra_species_af": "0.99",
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                "status": "-"
            },
            {
                "accession": "GCF_900112455.1",
                "gtdb_species": "s__Alkalibacterium subtropicum",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_001885615.1",
                "gtdb_species": "s__Alkalibacterium sp001885615",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_007988865.1",
                "gtdb_species": "s__Alkalibacterium kapii",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.172,
        "cell_length": 0.512,
        "doubling_h": 0.224,
        "growth_tmp": 29.55,
        "optimum_tmp": 32.428,
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        "genome_size": 2517358.166,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.25,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
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        "f__Carnobacteriaceae",
        "g__Alkalibacterium",
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    ],
    "_genome_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Carnobacteriaceae",
        "g__Alkalibacterium",
        "s__Alkalibacterium sp007692455",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Carnobacteriaceae",
        "Alkalibacterium",
        "Alkalibacterium",
        "sp007692455"
    ],
    "_meo": [
        {
            "id": "MEO_0000726",
            "label": "soda lake"
        },
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}