{ "type": "genome", "identifier": "GCA_020832545.1", "organism": "Pararhodobacter sp.", "title": "Pararhodobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020832545.1", "bioproject": "PRJNA377096", "biosample": "SAMN17266174", "wgs_master": "JAFIEK000000000.1", "refseq_category": "na", "taxid": "2127056", "species_taxid": "2127056", "organism_name": "Pararhodobacter sp.", "infraspecific_name": "", "isolate": "BM_Day12_Bin.30", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/10", "asm_name": "ASM2083254v1", "submitter": "University of Calgary", "gbrs_paired_asm": "GCF_020832545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/832/545/GCA_020832545.1_ASM2083254v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-10", "dateModified": "2021-11-10", "datePublished": "2021-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pararhodobacter sp." ], "sample_taxid": [ "2127056" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "1.224 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4371681", "Number of Sequences": "102", "Longest Sequences (bp)": "255962", "N50 (bp)": "80102", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "4167", "Average Protein Length": "313.4", "Coding Ratio (%)": "89.6", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdonatronobacter sediminivivens", "strain": "strain=IM2376", "accession": "GCA_013415485.1", "taxid": 2743469, "species_taxid": 2743469, "relation_to_type": "type", "validated": true, "ani": 78.5221, "matched_fragments": 477, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=D1-19", "accession": "GCA_003075525.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 78.3708, "matched_fragments": 549, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=DSM 18938", "accession": 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1374", "accession": "GCA_000520135.2", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 77.4187, "matched_fragments": 293, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.393, "matched_fragments": 283, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_001633165.1", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 77.3894, "matched_fragments": 301, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, 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"anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodobacterales", "f__Rhodobacteraceae", "g__Pararhodobacter", "s__Pararhodobacter sp020832545" ], "_genome_taxon": [ "Pararhodobacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodobacterales", "f__Rhodobacteraceae", "g__Pararhodobacter", "s__Pararhodobacter sp020832545", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhodobacterales", "Rhodobacteraceae", "Pararhodobacter", "Pararhodobacter", "sp020832545" ], "_meo": [ { "id": "MEO_0000726", "label": "soda lake" }, { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }