{ "type": "genome", "identifier": "GCA_020847015.1", "organism": "Thermomicrobiales bacterium", "title": "Thermomicrobiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020847015.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439619", "wgs_master": "JADLCW000000000.1", "refseq_category": "na", "taxid": "2482790", "species_taxid": "2482790", "organism_name": "Thermomicrobiales bacterium", "infraspecific_name": "", "isolate": "SJ248", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2084701v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/847/015/GCA_020847015.1_ASM2084701v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermomicrobiales bacterium" ], "sample_taxid": [ "2482790" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "1.042 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3766952", "Number of Sequences": "581", "Longest Sequences (bp)": "32939", "N50 (bp)": "7673", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "3004", "Average Protein Length": "301.7", "Coding Ratio (%)": "72.2", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Solimonas variicoloris", "strain": "strain=DSM 15731", "accession": "GCA_000382285.1", "taxid": 254408, "species_taxid": 254408, "relation_to_type": "type", "validated": true, "ani": 74.8154, "matched_fragments": 86, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 74.7743, "matched_fragments": 64, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas soli", "strain": "strain=DSM 21787", "accession": "GCA_000474945.1", "taxid": 413479, "species_taxid": 413479, "relation_to_type": "type", "validated": true, "ani": 74.7622, "matched_fragments": 77, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas nitritireducens", "strain": "strain=DSM 12575", "accession": "GCA_001431425.1", "taxid": 83617, "species_taxid": 83617, "relation_to_type": "type", "validated": true, "ani": 74.7382, "matched_fragments": 67, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenggerimyces flavus", "strain": "strain=DSM 28944", "accession": "GCA_016907715.1", "taxid": 1708749, "species_taxid": 1708749, "relation_to_type": "type", "validated": true, "ani": 74.6936, "matched_fragments": 67, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 74.6602, "matched_fragments": 75, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=TNe-841", "accession": "GCA_900104845.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 74.6323, "matched_fragments": 79, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=NCTC13007", "accession": "GCA_900446205.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 74.6307, "matched_fragments": 82, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000959525.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 74.628, "matched_fragments": 83, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 74.6196, "matched_fragments": 88, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=LMG 26416", "accession": "GCA_900109675.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 74.5805, "matched_fragments": 79, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902806345.1", "gtdb_species": "s__CADCWF01 sp902806345", "ani": 76.9371, "matched_fragments": 261, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__CADCWF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902806405.1", "gtdb_species": "s__CADCWL01 sp902806405", "ani": 76.324, "matched_fragments": 152, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__CADCWL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902806325.1", "gtdb_species": "s__CADCWE01 sp902806325", "ani": 76.1817, "matched_fragments": 146, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__CADCWE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013696525.1", "gtdb_species": "s__JACCYK01 sp013696525", "ani": 76.0882, "matched_fragments": 78, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__JACCYK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902806335.1", "gtdb_species": "s__CADCWG01 sp902806335", "ani": 75.8901, "matched_fragments": 151, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__CADCWG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016781925.1", "gtdb_species": "s__LC2-1 sp016781925", "ani": 75.8494, "matched_fragments": 58, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__LC2-1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.67", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_013694885.1", "gtdb_species": "s__JACDBO01 sp013694885", "ani": 75.8223, "matched_fragments": 56, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__JACDBO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013698285.1", "gtdb_species": "s__JACCVE01 sp013698285", "ani": 75.6892, "matched_fragments": 66, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__JACCVE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826305.1", "gtdb_species": "s__CADEEH01 sp902826305", "ani": 74.7901, "matched_fragments": 57, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__CADEEH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 67.5, "optimum_tmp": 70.625, "optimum_ph": 8.35, "genome_size": 2920743.2, "gc_content": 64.747, "coding_genes": 2687.333, "rRNA16S_genes": 2.0, "tRNA_genes": 48.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Chloroflexia", "o__Thermomicrobiales", "f__UBA6265", "g__CADCWF01", "s__CADCWF01 sp020847015" ], "_genome_taxon": [ "Thermomicrobiales", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Chloroflexia", "o__Thermomicrobiales", "f__UBA6265", "g__CADCWF01", "s__CADCWF01 sp020847015", "Bacteria", "Chloroflexota", "Chloroflexia", "Thermomicrobiales", "UBA6265", "CADCWF01", "CADCWF01", "sp020847015" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" }, { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }