{ "type": "genome", "identifier": "GCA_020847445.1", "organism": "Sphingomonadaceae bacterium", "title": "Sphingomonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020847445.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439835", "wgs_master": "JADLBY000000000.1", "refseq_category": "na", "taxid": "1930536", "species_taxid": "1930536", "organism_name": "Sphingomonadaceae bacterium", "infraspecific_name": "", "isolate": "SJ20", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2084744v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/847/445/GCA_020847445.1_ASM2084744v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonadaceae bacterium" ], "sample_taxid": [ "1930536" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 92.36, "contamination": 12.96, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3151445", "Number of Sequences": "232", "Longest Sequences (bp)": "67953", "N50 (bp)": "20513", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "2960", "Average Protein Length": "298.7", "Coding Ratio (%)": "84.2", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingorhabdus pulchriflava", "strain": "strain=GY_G", "accession": "GCA_003367235.1", "taxid": 2292257, "species_taxid": 2292257, "relation_to_type": "type", "validated": true, "ani": 82.2824, "matched_fragments": 595, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis panaciterrulae", "strain": "strain=DSM 27163", "accession": "GCA_014199295.1", "taxid": 462372, "species_taxid": 462372, "relation_to_type": "type", "validated": true, "ani": 78.2894, "matched_fragments": 279, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis solisilvae", "strain": "strain=R366", "accession": "GCA_015475875.1", "taxid": 1886788, "species_taxid": 1886788, "relation_to_type": "type", "validated": true, "ani": 78.0945, "matched_fragments": 289, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus lacus", "strain": "strain=IMCC1753", "accession": "GCA_009768975.1", "taxid": 392610, "species_taxid": 392610, "relation_to_type": "type", "validated": true, "ani": 77.8927, "matched_fragments": 267, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 77.8642, "matched_fragments": 235, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus contaminans", "strain": "strain=KCTC32445", "accession": "GCA_007280415.1", "taxid": 1343899, "species_taxid": 1343899, "relation_to_type": "type", "validated": true, "ani": 77.8368, "matched_fragments": 234, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 77.7867, "matched_fragments": 238, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 77.74, "matched_fragments": 286, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 77.6977, "matched_fragments": 202, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium ummariense", "strain": "strain=RL-3", "accession": "GCA_000447205.1", "taxid": 420994, "species_taxid": 420994, "relation_to_type": "type", "validated": true, "ani": 77.6024, "matched_fragments": 220, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium estronivorans", "strain": "strain=AXB", "accession": "GCA_008692605.1", "taxid": 1577690, "species_taxid": 1577690, "relation_to_type": "type", "validated": true, "ani": 77.5182, "matched_fragments": 216, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas spermidinifaciens", "strain": "strain=9NM-10", "accession": "GCA_002351485.1", "taxid": 1141889, "species_taxid": 1141889, "relation_to_type": "type", 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162, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas horti", "strain": "strain=MAH-20", "accession": "GCA_009753715.1", "taxid": 2682842, "species_taxid": 2682842, "relation_to_type": "type", "validated": true, "ani": 77.24, "matched_fragments": 210, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus rigui", "strain": "strain=DSM 29050", "accession": "GCA_014196595.1", "taxid": 1282858, "species_taxid": 1282858, "relation_to_type": "type", "validated": true, "ani": 77.2297, "matched_fragments": 190, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 77.0621, "matched_fragments": 204, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus wooponensis", "strain": "strain=03SU3-P", "accession": "GCA_003933235.1", "taxid": 940136, "species_taxid": 940136, "relation_to_type": "type", "validated": true, "ani": 77.0296, "matched_fragments": 143, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas rubra", "strain": "strain=CGMCC 1.9113", "accession": "GCA_900115745.1", "taxid": 634430, "species_taxid": 634430, "relation_to_type": "type", "validated": true, "ani": 76.8792, "matched_fragments": 180, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.36, "contamination": 12.96, "strain_heterogeneity": 75.0 }, "gtdb_result": [ { "accession": "GCA_016720115.1", "gtdb_species": "s__Sphingorhabdus_B sp016720115", "ani": 83.8302, "matched_fragments": 647, "total_fragments": 936, "gtdb_taxonomy": 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