{ "type": "genome", "identifier": "GCA_020849475.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020849475.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439775", "wgs_master": "JADLGE000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "SJ420", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2084947v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/849/475/GCA_020849475.1_ASM2084947v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "1.498 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5403854", "Number of Sequences": "137", "Longest Sequences (bp)": "234280", "N50 (bp)": "77899", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "4711", "Average Protein Length": "339.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 76.3451, "matched_fragments": 107, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 75.9827, "matched_fragments": 151, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 75.9292, "matched_fragments": 158, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 75.8825, "matched_fragments": 139, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Immundisolibacter cernigliae", "strain": "strain=TR3.2", "accession": "GCA_001697225.1", "taxid": 1810504, "species_taxid": 1810504, "relation_to_type": "type", "validated": true, "ani": 75.8676, "matched_fragments": 165, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pantelleriensis", "strain": "strain=AAP", "accession": "GCA_900102875.1", "taxid": 48727, "species_taxid": 48727, "relation_to_type": "type", "validated": true, "ani": 75.7831, "matched_fragments": 100, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 75.7587, "matched_fragments": 148, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylogaea oryzae", "strain": "strain=E10", "accession": "GCA_019669985.1", "taxid": 1295382, "species_taxid": 1295382, "relation_to_type": "type", "validated": true, "ani": 75.7586, "matched_fragments": 106, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vogesella fluminis", "strain": "strain=KCTC 23713", "accession": "GCA_014652335.1", "taxid": 1069161, "species_taxid": 1069161, "relation_to_type": "type", "validated": true, "ani": 75.6809, "matched_fragments": 115, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.6605, "matched_fragments": 230, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella choica", "strain": "strain=4 M-K27", "accession": "GCA_003977665.1", "taxid": 1927959, "species_taxid": 1927959, "relation_to_type": "type", "validated": true, "ani": 75.6181, "matched_fragments": 95, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 75.5665, "matched_fragments": 122, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 75.5651, "matched_fragments": 152, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans acidivorans", "strain": "strain=DSM 23606", "accession": "GCA_003182095.1", "taxid": 886464, "species_taxid": 886464, "relation_to_type": "type", "validated": true, "ani": 75.553, "matched_fragments": 165, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 75.5269, "matched_fragments": 59, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 75.5185, "matched_fragments": 108, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violascens", "strain": "strain=DSM 198", "accession": "GCA_000227745.3", "taxid": 73141, "species_taxid": 73141, "relation_to_type": "type", "validated": true, "ani": 75.5001, "matched_fragments": 91, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 75.5, "matched_fragments": 131, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vogesella indigofera", "strain": "strain=DSM 3303", "accession": "GCA_003633895.1", "taxid": 45465, "species_taxid": 45465, "relation_to_type": "type", "validated": true, "ani": 75.4897, "matched_fragments": 119, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 75.4877, "matched_fragments": 137, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 75.4572, "matched_fragments": 116, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalimonas asiatica", "strain": "strain=CGMCC 1.6291", "accession": 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75.1334, "matched_fragments": 194, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria avicenniae", "strain": "strain=DSM 23439", "accession": "GCA_900112585.1", "taxid": 402385, "species_taxid": 402385, "relation_to_type": "type", "validated": true, "ani": 75.1269, "matched_fragments": 53, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia violaceinigra", "strain": "strain=B2", "accession": "GCA_002752675.1", "taxid": 2045208, "species_taxid": 2045208, "relation_to_type": "type", "validated": true, "ani": 75.0822, "matched_fragments": 163, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 75.0675, "matched_fragments": 168, "total_fragments": 1729, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016719885.1", "gtdb_species": "s__JADJYF01 sp016719885", "ani": 86.2686, "matched_fragments": 1421, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ga0077536;f__Ga0077536;g__JADJYF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001464935.1", "gtdb_species": "s__Ga0077536 sp001464935", "ani": 76.9886, "matched_fragments": 388, "total_fragments": 1729, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ga0077536;f__Ga0077536;g__Ga0077536", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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