{ "type": "genome", "identifier": "GCA_020849715.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020849715.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439765", "wgs_master": "JADLAU000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "SJ139", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2084971v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/849/715/GCA_020849715.1_ASM2084971v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "0.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3627310", "Number of Sequences": "87", "Longest Sequences (bp)": "512169", "N50 (bp)": "154241", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "3359", "Average Protein Length": "332.9", "Coding Ratio (%)": "92.5", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Povalibacter uvarum", "strain": "strain=DSM 26723", "accession": "GCA_014202975.1", "taxid": 732238, "species_taxid": 732238, "relation_to_type": "type", "validated": true, "ani": 77.2069, "matched_fragments": 145, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter agaridevorans", "strain": "strain=SA29-B", "accession": "GCA_009932555.1", "taxid": 2695856, "species_taxid": 2695856, "relation_to_type": "type", "validated": true, "ani": 76.9797, "matched_fragments": 176, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter 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"GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 76.7678, "matched_fragments": 143, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 76.7592, "matched_fragments": 201, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter cummioxidans", "strain": "strain=35Y", "accession": "GCA_003104955.1", "taxid": 1803913, "species_taxid": 1803913, "relation_to_type": "type", "validated": true, "ani": 76.7421, "matched_fragments": 177, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter soli", "strain": "strain=JW-3", "accession": "GCA_004138485.1", "taxid": 2497877, "species_taxid": 2497877, "relation_to_type": "type", "validated": true, "ani": 76.742, "matched_fragments": 184, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter defluvii", "strain": "strain=IMMIB APB-9", "accession": "GCA_000769985.1", "taxid": 391738, "species_taxid": 391738, "relation_to_type": "type", "validated": true, "ani": 76.6642, "matched_fragments": 108, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 76.6608, "matched_fragments": 107, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 76.659, "matched_fragments": 215, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter defluvii", "strain": "strain=DSM 18482", "accession": "GCA_000423325.1", "taxid": 391738, "species_taxid": 391738, "relation_to_type": "type", "validated": true, "ani": 76.5809, "matched_fragments": 122, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter thiooxydans", "strain": "strain=LCS2", "accession": "GCA_000264375.1", "taxid": 416169, "species_taxid": 416169, "relation_to_type": "type", "validated": true, "ani": 76.495, "matched_fragments": 149, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 76.4888, "matched_fragments": 164, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 76.2952, "matched_fragments": 103, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Guyparkeria hydrothermalis", "strain": "strain=R3", "accession": "GCA_023555375.1", "taxid": 923, "species_taxid": 923, "relation_to_type": "type", "validated": true, "ani": 76.2943, "matched_fragments": 60, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 76.16, "matched_fragments": 205, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 76.1537, "matched_fragments": 167, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.1147, "matched_fragments": 124, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 76.0676, "matched_fragments": 235, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": 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