{ "type": "genome", "identifier": "GCA_020850435.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020850435.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439666", "wgs_master": "JADZES000000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "SJ834", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2085043v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/850/435/GCA_020850435.1_ASM2085043v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "2.372 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "8787773", "Number of Sequences": "124", "Longest Sequences (bp)": "467243", "N50 (bp)": "171824", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "7023", "Average Protein Length": "385.0", "Coding Ratio (%)": "92.3", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.3628, "matched_fragments": 402, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 75.2586, "matched_fragments": 262, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter pickeringii", "strain": "strain=G13", "accession": "GCA_000817955.1", "taxid": 345632, "species_taxid": 345632, "relation_to_type": "type", "validated": true, "ani": 75.243, "matched_fragments": 52, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 75.2208, "matched_fragments": 238, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas propionica", "strain": "strain=Red259", "accession": "GCA_016458235.1", "taxid": 2798582, "species_taxid": 2798582, "relation_to_type": "type", "validated": true, "ani": 75.2063, "matched_fragments": 98, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 75.1687, "matched_fragments": 255, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas abyssi", "strain": "strain=XH031", "accession": "GCA_001482195.1", "taxid": 1247514, "species_taxid": 1247514, "relation_to_type": "type", "validated": true, "ani": 75.1431, "matched_fragments": 124, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 75.0618, "matched_fragments": 101, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 75.0363, "matched_fragments": 166, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 75.0264, "matched_fragments": 239, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 75.0229, "matched_fragments": 123, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 74.9855, 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95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 74.9723, "matched_fragments": 145, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 74.9429, "matched_fragments": 299, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis albus", "strain": "strain=L22", "accession": "GCA_015904235.1", "taxid": 2793297, "species_taxid": 2793297, "relation_to_type": "type", "validated": true, "ani": 74.9325, "matched_fragments": 243, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=NML 130738", "accession": "GCA_004283755.1", "taxid": 2480810, "species_taxid": 2480810, "relation_to_type": "type", "validated": true, "ani": 74.8867, "matched_fragments": 165, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas vastitatis", "strain": "strain=CPCC 101021", "accession": "GCA_003604215.1", "taxid": 2307076, "species_taxid": 2307076, "relation_to_type": "type", "validated": true, "ani": 74.8439, "matched_fragments": 150, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides islandensis", "strain": "strain=KCTC 19275", "accession": "GCA_015352455.1", "taxid": 433663, "species_taxid": 433663, "relation_to_type": "type", "validated": true, "ani": 74.8422, "matched_fragments": 174, "total_fragments": 2870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter triazinivorans", "strain": "strain=JW-1", "accession": 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