{ "type": "genome", "identifier": "GCA_020851995.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020851995.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439790", "wgs_master": "JADZBO000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "SJ678", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2085199v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/851/995/GCA_020851995.1_ASM2085199v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "1.109 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.89, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3905253", "Number of Sequences": "290", "Longest Sequences (bp)": "163116", "N50 (bp)": "21080", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "3332", "Average Protein Length": "327.1", "Coding Ratio (%)": "83.7", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bordetella pseudohinzii", "strain": "strain=8-296-03", "accession": "GCA_000657795.2", "taxid": 1331258, "species_taxid": 1331258, "relation_to_type": "type", "validated": true, "ani": 77.7477, "matched_fragments": 202, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter deleyi", "strain": "strain=LMG 3458", "accession": "GCA_902859705.1", "taxid": 1353891, "species_taxid": 1353891, "relation_to_type": "type", "validated": true, "ani": 77.693, "matched_fragments": 231, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 77.6059, "matched_fragments": 211, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter aegrifaciens", "strain": "strain=LMG 26852", "accession": "GCA_902859735.1", "taxid": 1287736, "species_taxid": 1287736, "relation_to_type": "type", "validated": true, "ani": 77.5978, "matched_fragments": 218, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NBRC 15126", "accession": "GCA_001598595.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 77.592, "matched_fragments": 253, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 77.5722, "matched_fragments": 256, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=FDAARGOS_1543", "accession": "GCA_020736265.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 77.5704, "matched_fragments": 205, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, "species_taxid": 1287735, "relation_to_type": "type", "validated": true, "ani": 77.5637, "matched_fragments": 251, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 77.5583, "matched_fragments": 211, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella trematum", "strain": "strain=NCTC12995", "accession": "GCA_900445945.1", "taxid": 123899, "species_taxid": 123899, "relation_to_type": "type", "validated": true, "ani": 77.556, "matched_fragments": 191, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter animicus", "strain": "strain=LMG 26690", "accession": "GCA_902859585.1", "taxid": 1389935, "species_taxid": 1389935, "relation_to_type": "type", "validated": true, "ani": 77.5232, "matched_fragments": 214, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas humi", "strain": "strain=DSM 25336", "accession": "GCA_019166065.1", "taxid": 683355, "species_taxid": 683355, "relation_to_type": "type", "validated": true, "ani": 77.5021, "matched_fragments": 156, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchialis", "strain": "strain=AU3182", "accession": "GCA_001676705.1", "taxid": 463025, "species_taxid": 463025, "relation_to_type": "type", "validated": true, "ani": 77.3684, "matched_fragments": 171, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella hinzii", "strain": "strain=NCTC13199", "accession": "GCA_900637615.1", "taxid": 103855, "species_taxid": 103855, "relation_to_type": "type", "validated": true, "ani": 77.3164, "matched_fragments": 211, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pusillimonas caeni", "strain": "strain=KCTC 42353", "accession": "GCA_003545815.1", "taxid": 1348472, "species_taxid": 1348472, "relation_to_type": "type", "validated": true, "ani": 77.3054, "matched_fragments": 144, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella hinzii", "strain": "strain=LMG 13501", "accession": "GCA_001548475.1", "taxid": 103855, "species_taxid": 103855, "relation_to_type": "type", "validated": true, "ani": 77.274, "matched_fragments": 209, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella flabilis", "strain": "strain=AU10664", "accession": "GCA_001676725.1", "taxid": 463014, "species_taxid": 463014, "relation_to_type": "type", "validated": true, "ani": 77.2216, "matched_fragments": 170, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 77.1641, "matched_fragments": 154, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella 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"GCA_022688825.1", "taxid": 645616, "species_taxid": 645616, "relation_to_type": "type", "validated": true, "ani": 76.73, "matched_fragments": 110, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium soli", "strain": "strain=SJQ9", "accession": "GCA_003933735.1", "taxid": 2493092, "species_taxid": 2493092, "relation_to_type": "type", "validated": true, "ani": 76.4771, "matched_fragments": 81, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella plicata", "strain": "strain=DSM 17505", "accession": "GCA_004421005.1", "taxid": 321984, "species_taxid": 321984, "relation_to_type": "type", "validated": true, "ani": 76.2608, "matched_fragments": 82, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus malaysiensis", "strain": "strain=USMAA1020", "accession": "GCA_001854325.1", "taxid": 367825, "species_taxid": 367825, 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76.1289, "matched_fragments": 78, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 76.1038, "matched_fragments": 116, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 75.8663, "matched_fragments": 57, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.89, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903894155.1", "gtdb_species": "s__NBD-18 sp903894155", "ani": 81.5228, "matched_fragments": 726, "total_fragments": 1160, 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