{
    "type": "genome",
    "identifier": "GCA_020852005.1",
    "organism": "Dokdonella sp.",
    "title": "Dokdonella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020852005.1",
        "bioproject": "PRJNA611787",
        "biosample": "SAMN16439750",
        "wgs_master": "JADZBQ000000000.1",
        "refseq_category": "na",
        "taxid": "2291710",
        "species_taxid": "2291710",
        "organism_name": "Dokdonella sp.",
        "infraspecific_name": "",
        "isolate": "SJ680",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/12",
        "asm_name": "ASM2085200v1",
        "submitter": "University of Gothenburg",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/852/005/GCA_020852005.1_ASM2085200v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-12",
    "dateModified": "2021-11-12",
    "datePublished": "2021-11-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dokdonella sp."
        ],
        "sample_taxid": [
            "2291710"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden: Sjolunda WWTP"
        ],
        "sample_host_location_id": [],
        "data_size": "0.730 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.04,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2654340",
        "Number of Sequences": "290",
        "Longest Sequences (bp)": "71300",
        "N50 (bp)": "12164",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "2051",
        "Average Protein Length": "331.3",
        "Coding Ratio (%)": "76.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Dokdonella fugitiva",
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                "accession": "GCA_004342425.1",
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                "species_taxid": 328517,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 433,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dokdonella koreensis",
                "strain": "strain=DS-123",
                "accession": "GCA_001632775.1",
                "taxid": 323415,
                "species_taxid": 323415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7333,
                "matched_fragments": 308,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=LMG 19981",
                "accession": "GCA_006352285.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3617,
                "matched_fragments": 255,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=DSM 14263",
                "accession": "GCA_003148905.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3238,
                "matched_fragments": 275,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dokdonella immobilis",
                "strain": "strain=CGMCC 1.7659",
                "accession": "GCA_900115085.1",
                "taxid": 578942,
                "species_taxid": 578942,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1587,
                "matched_fragments": 290,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rudaea cellulosilytica",
                "strain": "strain=DSM 22992",
                "accession": "GCA_000378125.1",
                "taxid": 540746,
                "species_taxid": 540746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9652,
                "matched_fragments": 274,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oleiagrimonas citrea",
                "strain": "strain=MEBiC09124",
                "accession": "GCA_012395255.1",
                "taxid": 1665687,
                "species_taxid": 1665687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9461,
                "matched_fragments": 212,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tahibacter caeni",
                "strain": "strain=BUT-6",
                "accession": "GCA_024609805.1",
                "taxid": 1453545,
                "species_taxid": 1453545,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9221,
                "matched_fragments": 284,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella solisilvae",
                "strain": "strain=DHG54",
                "accession": "GCA_003351225.1",
                "taxid": 1920168,
                "species_taxid": 1920168,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9127,
                "matched_fragments": 223,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodanobacter fulvus",
                "strain": "strain=Jip2",
                "accession": "GCA_000264315.1",
                "taxid": 219571,
                "species_taxid": 219571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8037,
                "matched_fragments": 216,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tahibacter aquaticus",
                "strain": "strain=DSM 21667",
                "accession": "GCA_004363655.1",
                "taxid": 520092,
                "species_taxid": 520092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7962,
                "matched_fragments": 265,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella japonica",
                "strain": "strain=DSM 16301",
                "accession": "GCA_001010355.1",
                "taxid": 231455,
                "species_taxid": 231455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6582,
                "matched_fragments": 185,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella acidiphila",
                "strain": "strain=7MK23",
                "accession": "GCA_014863405.1",
                "taxid": 2775866,
                "species_taxid": 2775866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5985,
                "matched_fragments": 209,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.04,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002632325.1",
                "gtdb_species": "s__Dokdonella_A sp002632325",
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                "matched_fragments": 712,
                "total_fragments": 738,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014338185.1",
                "gtdb_species": "s__Dokdonella_A sp014338185",
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                "matched_fragments": 494,
                "total_fragments": 738,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.24",
                "min_intra_species_ani": "96.24",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004342425.1",
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                "matched_fragments": 432,
                "total_fragments": 738,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
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                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017744955.1",
                "gtdb_species": "s__Dokdonella_A sp017744955",
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                "matched_fragments": 440,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_014138265.1",
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                "matched_fragments": 448,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_002297645.1",
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            },
            {
                "accession": "GCA_004143945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001632775.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.09,
        "cell_length": 0.357,
        "doubling_h": null,
        "growth_tmp": 31.25,
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        "coding_genes": 3647.0,
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        "bacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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    "_genome_taxon": [
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        "p__Pseudomonadota",
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        "o__Xanthomonadales",
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        "s__Dokdonella_A sp002632325",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Xanthomonadales",
        "Rhodanobacteraceae",
        "Dokdonella",
        "A",
        "Dokdonella",
        "A",
        "sp002632325"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        },
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}