{ "type": "genome", "identifier": "GCA_020852595.1", "organism": "Rhodospirillaceae bacterium", "title": "Rhodospirillaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020852595.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439849", "wgs_master": "JADZAK000000000.1", "refseq_category": "na", "taxid": "1898112", "species_taxid": "1898112", "organism_name": "Rhodospirillaceae bacterium", "infraspecific_name": "", "isolate": "SJ625", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2085259v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/852/595/GCA_020852595.1_ASM2085259v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodospirillaceae bacterium" ], "sample_taxid": [ "1898112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "1.078 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 19.44, "strain_heterogeneity": 35.71, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3847547", "Number of Sequences": "259", "Longest Sequences (bp)": "92385", "N50 (bp)": "23749", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "3381", "Average Protein Length": "318.0", "Coding Ratio (%)": "83.8", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Magnetospirillum moscoviense", "strain": "strain=BB-1", "accession": "GCA_001650635.1", "taxid": 1437059, "species_taxid": 1437059, "relation_to_type": "type", "validated": true, "ani": 76.7617, "matched_fragments": 125, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira navarrensis", "strain": "strain=DSM 15114", "accession": "GCA_009601025.1", "taxid": 140058, "species_taxid": 140058, "relation_to_type": "type", "validated": true, "ani": 76.7012, "matched_fragments": 128, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella 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"GCA_000513295.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 76.4614, "matched_fragments": 112, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenispirillum salinarum", "strain": "strain=AK4", "accession": "GCA_000315795.1", "taxid": 859058, "species_taxid": 859058, "relation_to_type": "type", "validated": true, "ani": 76.4582, "matched_fragments": 186, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum melinis", "strain": "strain=TMCY0552", "accession": "GCA_013340935.1", "taxid": 328839, "species_taxid": 328839, "relation_to_type": "type", "validated": true, "ani": 76.4325, "matched_fragments": 174, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum aberrantis", "strain": "strain=SpK", "accession": "GCA_011022235.1", "taxid": 1105283, "species_taxid": 1105283, "relation_to_type": "type", "validated": true, "ani": 76.4229, "matched_fragments": 122, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum magnetotacticum", "strain": "strain=MS-1", "accession": "GCA_000829825.1", "taxid": 188, "species_taxid": 188, "relation_to_type": "type", "validated": true, "ani": 76.4191, "matched_fragments": 120, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum melinis", "strain": "strain=TMCY 0552", "accession": "GCA_017876055.1", "taxid": 328839, "species_taxid": 328839, "relation_to_type": "type", "validated": true, "ani": 76.3994, "matched_fragments": 173, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum humicireducens", "strain": "strain=SgZ-5", "accession": "GCA_001639105.2", "taxid": 1226968, "species_taxid": 1226968, "relation_to_type": "type", "validated": true, "ani": 76.3651, "matched_fragments": 177, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": true, "ani": 76.3266, "matched_fragments": 138, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 76.324, "matched_fragments": 150, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum lipoferum", "strain": "strain=59b", "accession": "GCA_008364955.1", "taxid": 193, "species_taxid": 193, "relation_to_type": "type", "validated": true, "ani": 76.3229, "matched_fragments": 169, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.3171, "matched_fragments": 129, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 76.2845, "matched_fragments": 185, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea acidiphila", "strain": "strain=MEBiC11861", "accession": "GCA_024662015.1", "taxid": 1862145, "species_taxid": 1862145, "relation_to_type": "type", "validated": true, "ani": 76.2662, "matched_fragments": 115, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidongia dinghuensis", "strain": "strain=CGMCC 1.15725", "accession": "GCA_014643535.1", "taxid": 1867774, "species_taxid": 1867774, "relation_to_type": "type", "validated": true, "ani": 76.2356, "matched_fragments": 155, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter oligotrophicus", "strain": "strain=29k", "accession": "GCA_008364685.1", "taxid": 2607286, "species_taxid": 2607286, "relation_to_type": "type", "validated": true, "ani": 76.2145, "matched_fragments": 117, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 76.1356, "matched_fragments": 131, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella soli", "strain": "strain=NBRC 108950", "accession": "GCA_007992495.1", "taxid": 1230389, "species_taxid": 1230389, "relation_to_type": "type", "validated": true, "ani": 76.1161, "matched_fragments": 185, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella aerolata", "strain": "strain=5416T-32", "accession": "GCA_000936425.1", "taxid": 393310, "species_taxid": 393310, "relation_to_type": "type", "validated": true, "ani": 76.0992, "matched_fragments": 138, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum cavernae", "strain": "strain=K2W22B-5", "accession": "GCA_003590795.1", "taxid": 2320860, "species_taxid": 2320860, "relation_to_type": "type", "validated": true, "ani": 76.0907, "matched_fragments": 138, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 76.0892, "matched_fragments": 98, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_018398355.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 76.0877, "matched_fragments": 90, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 76.0853, "matched_fragments": 142, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, 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