{ "type": "genome", "identifier": "GCA_020852655.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020852655.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439831", "wgs_master": "JADZAI000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "SJ623", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2085265v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/852/655/GCA_020852655.1_ASM2085265v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "1.081 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.75, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3948824", "Number of Sequences": "115", "Longest Sequences (bp)": "183976", "N50 (bp)": "98402", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "3802", "Average Protein Length": "308.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 76.6375, "matched_fragments": 260, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=ATCC 33669", "accession": "GCA_013170785.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 76.6192, "matched_fragments": 222, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=LMG 28313", "accession": "GCA_003601985.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 76.6137, "matched_fragments": 219, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 76.6102, "matched_fragments": 268, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium embrapense", "strain": "strain=SEMIA 6208", "accession": "GCA_001189235.2", "taxid": 630921, "species_taxid": 630921, "relation_to_type": "type", "validated": true, "ani": 76.5692, "matched_fragments": 252, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 76.5444, "matched_fragments": 214, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 76.5222, "matched_fragments": 281, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, "relation_to_type": "type", "validated": true, "ani": 76.5001, "matched_fragments": 255, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 76.4761, "matched_fragments": 198, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvibaculum indicum", "strain": "strain=DSM 25305", "accession": "GCA_011762095.1", "taxid": 562969, "species_taxid": 562969, "relation_to_type": "type", "validated": true, "ani": 76.4758, "matched_fragments": 178, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter carbonis", "strain": "strain=Q4.6", "accession": "GCA_003012935.1", "taxid": 2067569, "species_taxid": 2067569, "relation_to_type": "type", "validated": true, "ani": 76.4193, "matched_fragments": 166, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia elaeis", "strain": "strain=S37", "accession": "GCA_001650025.1", "taxid": 1770058, "species_taxid": 1770058, "relation_to_type": "type", "validated": true, "ani": 76.4119, "matched_fragments": 113, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sanjuanii", "strain": "strain=BSA136", "accession": "GCA_002529485.1", "taxid": 2037900, "species_taxid": 2037900, "relation_to_type": "type", "validated": true, "ani": 76.3833, "matched_fragments": 218, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicitalea aurantiaca", "strain": "strain=42-50", "accession": "GCA_003994485.1", "taxid": 1783274, "species_taxid": 1783274, "relation_to_type": "type", "validated": true, "ani": 76.3757, "matched_fragments": 113, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 76.3617, "matched_fragments": 189, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizomicrobium electricum", "strain": "strain=DSM 21034", "accession": "GCA_011762045.1", "taxid": 480070, "species_taxid": 480070, "relation_to_type": "type", "validated": true, "ani": 76.3608, "matched_fragments": 197, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 76.3293, "matched_fragments": 276, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia geojensis", "strain": "strain=BD-c194", "accession": "GCA_000969415.1", "taxid": 443610, "species_taxid": 443610, "relation_to_type": "type", "validated": true, "ani": 76.2687, "matched_fragments": 166, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter dioxanivorans", "strain": "strain=YN2", "accession": "GCA_016807805.1", "taxid": 2528964, "species_taxid": 2528964, "relation_to_type": "type", "validated": true, "ani": 76.2271, "matched_fragments": 211, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas endophytica", "strain": "strain=CGMCC 1.15367", "accession": "GCA_014642635.1", "taxid": 2027858, "species_taxid": 2027858, "relation_to_type": "type", "validated": true, "ani": 76.19, "matched_fragments": 267, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 76.1628, "matched_fragments": 197, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia insulae", "strain": "strain=DS-56", "accession": "GCA_000970465.2", "taxid": 408174, "species_taxid": 408174, "relation_to_type": "type", "validated": true, "ani": 76.1161, "matched_fragments": 150, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=DSM 14782", "accession": "GCA_000382365.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1115, "matched_fragments": 150, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 76.0964, "matched_fragments": 256, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=NCTC13350", "accession": "GCA_900454465.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0951, "matched_fragments": 153, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium cerastii", "strain": "strain=DSM 23679", "accession": "GCA_022179125.1", "taxid": 932741, "species_taxid": 932741, "relation_to_type": "type", "validated": true, "ani": 76.0941, "matched_fragments": 244, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gossipiicola", "strain": "strain=Gh-105", "accession": "GCA_900113485.1", "taxid": 582675, "species_taxid": 582675, "relation_to_type": "type", "validated": true, "ani": 75.9668, "matched_fragments": 165, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia enhydra", "strain": "strain=ATCC 23634", "accession": "GCA_900119845.1", "taxid": 665118, "species_taxid": 665118, "relation_to_type": "type", "validated": true, "ani": 75.9625, "matched_fragments": 125, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 75.9598, "matched_fragments": 199, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aestuarii", "strain": "strain=SYSU M00256-3", "accession": "GCA_008477545.1", "taxid": 2600299, "species_taxid": 2600299, "relation_to_type": "type", "validated": true, "ani": 75.9154, "matched_fragments": 142, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=NBRC 15690", "accession": "GCA_007991055.1", "taxid": 31998, 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