{ "type": "genome", "identifier": "GCA_020853995.1", "organism": "Novosphingobium sp.", "title": "Novosphingobium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020853995.1", "bioproject": "PRJNA611787", "biosample": "SAMN16439834", "wgs_master": "JADYXV000000000.1", "refseq_category": "na", "taxid": "1874826", "species_taxid": "1874826", "organism_name": "Novosphingobium sp.", "infraspecific_name": "", "isolate": "SJ501", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "ASM2085399v1", "submitter": "University of Gothenburg", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/853/995/GCA_020853995.1_ASM2085399v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium sp." ], "sample_taxid": [ "1874826" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Sjolunda WWTP" ], "sample_host_location_id": [], "data_size": "0.828 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 53.94, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2927365", "Number of Sequences": "402", "Longest Sequences (bp)": "36396", "N50 (bp)": "9332", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "2507", "Average Protein Length": "301.0", "Coding Ratio (%)": "77.3", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium hassiacum", "strain": "strain=DSM 14552", "accession": "GCA_014196055.1", "taxid": 173676, "species_taxid": 173676, "relation_to_type": "type", "validated": true, "ani": 80.3178, "matched_fragments": 405, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium taihuense", "strain": "strain=DSM 17507", "accession": "GCA_014199635.1", "taxid": 260085, "species_taxid": 260085, "relation_to_type": "type", "validated": true, "ani": 79.7779, "matched_fragments": 420, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium taihuense", "strain": "strain=CGMCC 1.3432", "accession": "GCA_007830315.1", "taxid": 260085, "species_taxid": 260085, "relation_to_type": "type", "validated": true, "ani": 79.7412, "matched_fragments": 425, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 79.7206, "matched_fragments": 421, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=NBRC 16086", "accession": "GCA_001598575.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 79.5038, "matched_fragments": 392, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 79.5007, "matched_fragments": 404, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium meiothermophilum", "strain": "strain=SYSU G00007", "accession": "GCA_003171715.1", "taxid": 2202251, "species_taxid": 2202251, "relation_to_type": "type", "validated": true, "ani": 79.3586, "matched_fragments": 409, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aromaticivorans", "strain": "strain=DSM 12444", "accession": "GCA_000013325.1", "taxid": 48935, "species_taxid": 48935, "relation_to_type": "type", "validated": true, "ani": 79.2991, "matched_fragments": 390, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.0802, "matched_fragments": 290, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 78.631, "matched_fragments": 237, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fuchskuhlense", "strain": "strain=FNE08-7", "accession": "GCA_001519075.1", "taxid": 1117702, "species_taxid": 1117702, "relation_to_type": "type", "validated": true, "ani": 78.1857, "matched_fragments": 241, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, "relation_to_type": "type", "validated": true, "ani": 77.6091, "matched_fragments": 189, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania sphaerica", "strain": "strain=GH29", "accession": "GCA_019711595.1", "taxid": 2867243, "species_taxid": 2867243, "relation_to_type": "type", "validated": true, "ani": 76.937, "matched_fragments": 108, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 76.8293, "matched_fragments": 105, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 53.94, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002280675.1", "gtdb_species": "s__Novosphingobium sp002280675", "ani": 90.3887, "matched_fragments": 594, "total_fragments": 777, 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