{
    "type": "genome",
    "identifier": "GCA_020890855.1",
    "organism": "Candidatus Contendobacter sp.",
    "title": "Candidatus Contendobacter sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020890855.1",
        "bioproject": "PRJNA691751",
        "biosample": "SAMN18325147",
        "wgs_master": "JAJHPN000000000.1",
        "refseq_category": "na",
        "taxid": "2651161",
        "species_taxid": "2651161",
        "organism_name": "Candidatus Contendobacter sp.",
        "infraspecific_name": "",
        "isolate": "GW-Mt35",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/19",
        "asm_name": "ASM2089085v1",
        "submitter": "Radboud University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/890/855/GCA_020890855.1_ASM2089085v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-19",
    "dateModified": "2021-11-19",
    "datePublished": "2021-11-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Contendobacter sp."
        ],
        "sample_taxid": [
            "2651161"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Groesbeek"
        ],
        "sample_host_location_id": [],
        "data_size": "0.929 MB",
        "sample_ph_range": {
            "min": 74.0,
            "max": 74.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3259133",
        "Number of Sequences": "453",
        "Longest Sequences (bp)": "45232",
        "N50 (bp)": "11291",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.6",
        "Number of CDSs": "2468",
        "Average Protein Length": "322.4",
        "Coding Ratio (%)": "73.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thiocystis minor",
                "strain": "strain=DSM 178",
                "accession": "GCA_016653465.1",
                "taxid": 61597,
                "species_taxid": 61597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0232,
                "matched_fragments": 54,
                "total_fragments": 839,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Plasticicumulans acidivorans",
                "strain": "strain=DSM 23606",
                "accession": "GCA_003182095.1",
                "taxid": 886464,
                "species_taxid": 886464,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9971,
                "matched_fragments": 79,
                "total_fragments": 839,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Plasticicumulans lactativorans",
                "strain": "strain=DSM 25287",
                "accession": "GCA_004341245.1",
                "taxid": 1133106,
                "species_taxid": 1133106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5782,
                "matched_fragments": 86,
                "total_fragments": 839,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_003989085.1",
                "gtdb_species": "s__RXIV01 sp003989085",
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                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__RXIV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903879705.1",
                "gtdb_species": "s__RXIV01 sp903879705",
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                "matched_fragments": 483,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__RXIV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_008933795.1",
                "gtdb_species": "s__Contendobacter sp008933795",
                "ani": 79.2038,
                "matched_fragments": 406,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Contendobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002391525.1",
                "gtdb_species": "s__Competibacter_A sp002391525",
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                "matched_fragments": 351,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Competibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002352185.1",
                "gtdb_species": "s__Contendobacter sp002352185",
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                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Contendobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_012031845.1",
                "gtdb_species": "s__Contendobacter sp012031845",
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                "matched_fragments": 309,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Contendobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016699715.1",
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                "matched_fragments": 327,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Competibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Contendobacter",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_007695245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__REEE01",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_012939995.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Competibacter",
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            },
            {
                "accession": "GCA_016790045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Competibacter_A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_003527885.1",
                "gtdb_species": "s__Competibacter_A sp003527885",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Competibacter_A",
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                "mean_intra_species_ani": "N/A",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
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        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Competibacterales",
        "f__Competibacteraceae",
        "g__RXIV01",
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    ],
    "_genome_taxon": [
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        "Contendobacter",
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        "d__Bacteria",
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        "c__Gammaproteobacteria",
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        "f__Competibacteraceae",
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        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Competibacterales",
        "Competibacteraceae",
        "RXIV01",
        "RXIV01",
        "sp020890855"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        },
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}