{
    "type": "genome",
    "identifier": "GCA_020905635.1",
    "organism": "Microcystis aeruginosa NIBR18",
    "title": "Microcystis aeruginosa NIBR18",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "korea university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020905635.1",
        "bioproject": "PRJNA530625",
        "biosample": "SAMN22871031",
        "wgs_master": "",
        "refseq_category": "na",
        "taxid": "2894165",
        "species_taxid": "1126",
        "organism_name": "Microcystis aeruginosa NIBR18",
        "infraspecific_name": "",
        "isolate": "NIBR18",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/21",
        "asm_name": "ASM2090563v1",
        "submitter": "korea university",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/905/635/GCA_020905635.1_ASM2090563v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-21",
    "dateModified": "2021-11-21",
    "datePublished": "2021-11-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microcystis aeruginosa NIBR18"
        ],
        "sample_taxid": [
            "2894165"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Haengju bridge"
        ],
        "sample_host_location_id": [],
        "data_size": "1.621 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5868528",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5868528",
        "N50 (bp)": "5868528",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "5974",
        "Average Protein Length": "251.2",
        "Coding Ratio (%)": "76.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Microcystis aeruginosa",
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                "accession": "GCA_000010625.1",
                "taxid": 1126,
                "species_taxid": 1126,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 1534,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gloeothece verrucosa",
                "strain": "strain=PCC 7822",
                "accession": "GCA_000147335.1",
                "taxid": 2546359,
                "species_taxid": 2546359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3755,
                "matched_fragments": 141,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cylindrospermopsis raciborskii",
                "strain": "strain=Cr2010",
                "accession": "GCA_003367075.2",
                "taxid": 77022,
                "species_taxid": 77022,
                "relation_to_type": "reftype",
                "validated": true,
                "ani": 76.3653,
                "matched_fragments": 72,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cyanobacterium aponinum",
                "strain": "strain=PCC 10605",
                "accession": "GCA_000317675.1",
                "taxid": 379064,
                "species_taxid": 379064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1606,
                "matched_fragments": 73,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planktothrix tepida",
                "strain": "strain=PCC9214",
                "accession": "GCA_904830955.1",
                "taxid": 1678309,
                "species_taxid": 1678309,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1345,
                "matched_fragments": 100,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crocosphaera watsonii",
                "strain": "strain=WH 8501",
                "accession": "GCA_000167195.1",
                "taxid": 263511,
                "species_taxid": 263511,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.0775,
                "matched_fragments": 93,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crocosphaera subtropica",
                "strain": "strain=ATCC 51142",
                "accession": "GCA_000017845.1",
                "taxid": 2546360,
                "species_taxid": 2546360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0619,
                "matched_fragments": 101,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=NIES-19",
                "accession": "GCA_002367955.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.019,
                "matched_fragments": 84,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gloeothece citriformis",
                "strain": "strain=PCC 7424",
                "accession": "GCA_000021825.1",
                "taxid": 2546356,
                "species_taxid": 2546356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9178,
                "matched_fragments": 166,
                "total_fragments": 1956,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000010625.1",
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                "ani": 96.3421,
                "matched_fragments": 1533,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.1724,
                "mean_intra_species_ani": "96.68",
                "min_intra_species_ani": "95.93",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 17,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001264245.1",
                "gtdb_species": "s__Microcystis panniformis_A",
                "ani": 94.992,
                "matched_fragments": 1455,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.1724,
                "mean_intra_species_ani": "97.17",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_002282935.1",
                "gtdb_species": "s__Microcystis sp002282935",
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                "matched_fragments": 1102,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 36,
                "status": "-"
            },
            {
                "accession": "GCF_014696875.1",
                "gtdb_species": "s__Microcystis wesenbergii",
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                "matched_fragments": 1282,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.96",
                "min_intra_species_ani": "95.05",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_000297435.1",
                "gtdb_species": "s__Microcystis sp000297435",
                "ani": 94.6117,
                "matched_fragments": 1164,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "95.21",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000981785.2",
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                "ani": 94.4733,
                "matched_fragments": 1254,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.68",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_014698335.1",
                "gtdb_species": "s__Microcystis panniformis",
                "ani": 94.3384,
                "matched_fragments": 1260,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
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                "mean_intra_species_ani": "96.86",
                "min_intra_species_ani": "95.11",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 40,
                "status": "-"
            },
            {
                "accession": "GCF_008974145.1",
                "gtdb_species": "s__Microcystis aeruginosa_G",
                "ani": 93.8493,
                "matched_fragments": 1123,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015206885.1",
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                "matched_fragments": 1130,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.01",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_009792235.1",
                "gtdb_species": "s__Microcystis viridis",
                "ani": 93.7635,
                "matched_fragments": 1380,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
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                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_007095845.1",
                "gtdb_species": "s__Microcystis aeruginosa_D",
                "ani": 93.2772,
                "matched_fragments": 1164,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
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                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "95.43",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_009995705.1",
                "gtdb_species": "s__Microcystis aeruginosa_F",
                "ani": 93.0828,
                "matched_fragments": 1192,
                "total_fragments": 1956,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcystaceae;g__Microcystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.582,
        "cell_length": 0.416,
        "doubling_h": 1.137,
        "growth_tmp": 25.667,
        "optimum_tmp": 25.2,
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        "genome_size": 5031343.29,
        "gc_content": 42.496,
        "coding_genes": 4820.833,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 41.6,
        "gram_stain": 0.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcystaceae",
        "g__Microcystis",
        "s__Microcystis aeruginosa"
    ],
    "_genome_taxon": [
        "Microcystis",
        "aeruginosa",
        "NIBR18",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcystaceae",
        "g__Microcystis",
        "s__Microcystis aeruginosa",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Microcystaceae",
        "Microcystis",
        "Microcystis",
        "aeruginosa"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}