{ "type": "genome", "identifier": "GCA_020907825.1", "organism": "Enterococcus aquimarinus", "title": "Enterococcus aquimarinus", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "Quadram Institutte", "publication": [ {} ], "properties": { "assembly_accession": "GCA_020907825.1", "bioproject": "PRJNA543206", "biosample": "SAMN21194423", "wgs_master": "JAJJVO000000000.1", "refseq_category": "na", "taxid": "328396", "species_taxid": "328396", "organism_name": "Enterococcus aquimarinus", "infraspecific_name": "", "isolate": "150", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/21", "asm_name": "ASM2090782v1", "submitter": "Quadram Institutte", "gbrs_paired_asm": "GCF_020907825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/907/825/GCA_020907825.1_ASM2090782v1", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-21", "dateModified": "2021-11-21", "datePublished": "2021-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus aquimarinus" ], "sample_taxid": [ "328396" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: University of Surrey, Guildford" ], "sample_host_location_id": [], "data_size": "0.601 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2107307", "Number of Sequences": "157", "Longest Sequences (bp)": "110417", "N50 (bp)": "17890", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.1", "Number of CDSs": "1956", "Average Protein Length": "292.1", "Coding Ratio (%)": "81.3", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus aquimarinus", "strain": "strain=DSM 17690", "accession": "GCA_001885765.1", "taxid": 328396, "species_taxid": 328396, "relation_to_type": "type", "validated": true, "ani": 98.5371, "matched_fragments": 557, "total_fragments": 628, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus alcedinis", "strain": "strain=CCM 8433", "accession": "GCA_014635985.1", "taxid": 1274384, "species_taxid": 1274384, "relation_to_type": "type", "validated": true, "ani": 79.3065, "matched_fragments": 248, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus columbae", "strain": "strain=ATCC 51263", "accession": "GCA_000406925.1", "taxid": 1355, "species_taxid": 1355, "relation_to_type": "type", "validated": true, "ani": 78.1662, "matched_fragments": 89, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus penaei", "strain": "strain=CD276", "accession": "GCA_001998885.1", "taxid": 633807, "species_taxid": 633807, "relation_to_type": "type", "validated": true, "ani": 78.038, "matched_fragments": 52, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus columbae", "strain": "strain=ATCC 51263", "accession": "GCA_000407225.1", "taxid": 1355, "species_taxid": 1355, "relation_to_type": "type", "validated": true, "ani": 77.9944, "matched_fragments": 86, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus penaei", "strain": "strain=LMG 24833", "accession": "GCA_003987515.1", "taxid": 633807, "species_taxid": 633807, "relation_to_type": "type", "validated": true, "ani": 77.971, "matched_fragments": 53, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus columbae", "strain": "strain=DSM 7374", "accession": "GCA_001885835.1", "taxid": 1355, "species_taxid": 1355, "relation_to_type": "type", "validated": true, "ani": 77.8927, "matched_fragments": 83, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000393835.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7723, "matched_fragments": 73, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=FDAARGOS_1123", "accession": "GCA_016766815.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7523, "matched_fragments": 77, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=DSM 20160", "accession": "GCA_001885955.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7447, "matched_fragments": 75, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 77.7239, "matched_fragments": 74, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.699, "matched_fragments": 75, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=NBRC 100478", "accession": "GCA_001544095.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 77.6803, "matched_fragments": 79, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=DSM 20680", "accession": "GCA_001885845.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 77.6597, "matched_fragments": 78, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=NBRC 101867", "accession": "GCA_007989705.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 77.6426, "matched_fragments": 84, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=NCTC12361", "accession": "GCA_900447665.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 77.6272, "matched_fragments": 81, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 77.6177, "matched_fragments": 69, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 77.5698, "matched_fragments": 66, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=DSM 21767", "accession": "GCA_001886265.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 77.5644, "matched_fragments": 82, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.5635, "matched_fragments": 74, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=FDAARGOS_1120", "accession": "GCA_016727345.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 77.5293, "matched_fragments": 76, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus allomyrinae", "strain": 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