{
    "type": "genome",
    "identifier": "GCA_020996775.1",
    "organism": "Bathymodiolus brooksi methanotrophic gill symbiont",
    "title": "Bathymodiolus brooksi methanotrophic gill symbiont",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "CRC 1182 Origin and Function of Metaorganisms",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_020996775.1",
        "bioproject": "PRJNA508280",
        "biosample": "SAMN21876956",
        "wgs_master": "JAJJBB000000000.1",
        "refseq_category": "na",
        "taxid": "1052207",
        "species_taxid": "1052207",
        "organism_name": "Bathymodiolus brooksi methanotrophic gill symbiont",
        "infraspecific_name": "",
        "isolate": "MOX N",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/29",
        "asm_name": "ASM2099677v1",
        "submitter": "CRC 1182 Origin and Function of Metaorganisms",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/996/775/GCA_020996775.1_ASM2099677v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-29",
    "dateModified": "2021-11-29",
    "datePublished": "2021-11-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bathymodiolus brooksi methanotrophic gill symbiont"
        ],
        "sample_taxid": [
            "1052207"
        ],
        "sample_host_organism": [
            "Bathymodiolus brooksi"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Gulf of Mexico"
        ],
        "sample_host_location_id": [],
        "data_size": "0.711 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2487244",
        "Number of Sequences": "379",
        "Longest Sequences (bp)": "72557",
        "N50 (bp)": "11569",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.8",
        "Number of CDSs": "2549",
        "Average Protein Length": "262.9",
        "Coding Ratio (%)": "80.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methyloprofundus sedimenti",
                "strain": "strain=WF1",
                "accession": "GCA_002072955.1",
                "taxid": 1420851,
                "species_taxid": 1420851,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 158,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900128525.1",
                "gtdb_species": "s__Methyloprofundus sp900128525",
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                "matched_fragments": 191,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002189065.1",
                "gtdb_species": "s__Methyloprofundus sp002189065",
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                "matched_fragments": 166,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016592635.1",
                "gtdb_species": "s__Methyloprofundus sp016592635",
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                "matched_fragments": 211,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859465.1",
                "gtdb_species": "s__Methyloprofundus sp014859465",
                "ani": 77.7389,
                "matched_fragments": 171,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013138595.1",
                "gtdb_species": "s__Methyloprofundus sp013138595",
                "ani": 77.6758,
                "matched_fragments": 128,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002072955.1",
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                "matched_fragments": 157,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012960135.1",
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                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_013138555.1",
                "gtdb_species": "s__Methyloprofundus sp013138555",
                "ani": 77.2564,
                "matched_fragments": 99,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methyloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013139755.1",
                "gtdb_species": "s__QPIN01 sp013139755",
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                "matched_fragments": 73,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__QPIN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methyloprofundus",
        "s__Methyloprofundus sp020996635"
    ],
    "_genome_taxon": [
        "Bathymodiolus",
        "brooksi",
        "methanotrophic",
        "gill",
        "symbiont",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methyloprofundus",
        "s__Methyloprofundus sp020996635",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Methylococcales",
        "Methylomonadaceae",
        "Methyloprofundus",
        "Methyloprofundus",
        "sp020996635"
    ],
    "_meo": [
        {
            "id": "MEO_0000420",
            "label": "symbiotic microbe"
        },
        {
            "id": "MEO_0001170",
            "label": "cold seep"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}