{ "type": "genome", "identifier": "GCA_021151825.1", "organism": "Cellvibrionaceae bacterium", "title": "Cellvibrionaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021151825.1", "bioproject": "PRJNA691978", "biosample": "SAMN17967814", "wgs_master": "JAGKWQ000000000.1", "refseq_category": "na", "taxid": "2026723", "species_taxid": "2026723", "organism_name": "Cellvibrionaceae bacterium", "infraspecific_name": "", "isolate": "C8_D7_007", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/10", "asm_name": "ASM2115182v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/151/825/GCA_021151825.1_ASM2115182v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-10", "dateModified": "2021-12-10", "datePublished": "2021-12-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellvibrionaceae bacterium" ], "sample_taxid": [ "2026723" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Georgia" ], "sample_host_location_id": [], "data_size": "1.640 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.37, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5770752", "Number of Sequences": "70", "Longest Sequences (bp)": "1103832", "N50 (bp)": "394856", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.9", "Number of CDSs": "4749", "Average Protein Length": "353.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "2", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellvibrio zantedeschiae", "strain": "strain=KCTC 32239", "accession": "GCA_014652535.1", "taxid": 1237077, "species_taxid": 1237077, "relation_to_type": "type", "validated": true, "ani": 77.8111, "matched_fragments": 271, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellvibrio japonicus", "strain": "strain=Ueda107", "accession": "GCA_000019225.1", "taxid": 155077, "species_taxid": 155077, "relation_to_type": "type", "validated": true, "ani": 77.6438, "matched_fragments": 339, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellvibrio polysaccharolyticus", "strain": "strain=Ka43", "accession": "GCA_015182315.1", "taxid": 2082724, "species_taxid": 2082724, "relation_to_type": "type", "validated": true, "ani": 77.2076, "matched_fragments": 179, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium alkaliphilum", "strain": "strain=SW121", "accession": "GCA_003259155.1", "taxid": 2202654, "species_taxid": 2202654, "relation_to_type": "type", "validated": true, "ani": 76.6003, "matched_fragments": 57, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilvimarinus polysaccharolyticus", "strain": "strain=YN3", "accession": "GCA_001187555.1", "taxid": 863921, "species_taxid": 863921, "relation_to_type": "type", "validated": true, "ani": 76.5067, "matched_fragments": 57, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_011683895.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.4901, "matched_fragments": 54, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_014207695.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.4901, "matched_fragments": 54, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=LMG 25246", "accession": "GCA_011602085.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.386, "matched_fragments": 53, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariicella albida", "strain": "strain=HHU G3-2", "accession": "GCA_018863235.1", "taxid": 2842452, "species_taxid": 2842452, "relation_to_type": "type", "validated": true, "ani": 76.1685, "matched_fragments": 55, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilvimarinus chinensis", "strain": "strain=DSM 19667", "accession": "GCA_000377745.1", "taxid": 396005, "species_taxid": 396005, "relation_to_type": "type", "validated": true, "ani": 76.1625, "matched_fragments": 74, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 93.37, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000766945.1", "gtdb_species": "s__Cellvibrio mixtus_A", "ani": 87.6478, "matched_fragments": 1433, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003056245.1", "gtdb_species": "s__Cellvibrio sp003056245", "ani": 83.2469, "matched_fragments": 1229, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008806975.1", "gtdb_species": "s__Cellvibrio sp008806975", "ani": 80.3291, "matched_fragments": 889, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004363885.1", "gtdb_species": "s__Cellvibrio sp004363885", "ani": 79.2992, "matched_fragments": 647, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001183545.1", "gtdb_species": "s__Cellvibrio sp001183545", "ani": 79.1441, "matched_fragments": 616, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002483365.1", "gtdb_species": "s__Cellvibrio sp002483365", "ani": 78.9467, "matched_fragments": 602, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002007605.1", "gtdb_species": "s__Cellvibrio sp002007605", "ani": 78.8863, "matched_fragments": 522, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002483145.1", "gtdb_species": "s__Cellvibrio sp002483145", "ani": 78.8441, "matched_fragments": 678, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953825.1", "gtdb_species": "s__Cellvibrio sp000953825", "ani": 78.8401, "matched_fragments": 568, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008806955.1", "gtdb_species": "s__Cellvibrio sp000263355", "ani": 78.7961, "matched_fragments": 513, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003524365.1", "gtdb_species": "s__Cellvibrio sp003524365", "ani": 78.7084, "matched_fragments": 510, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011602085.1", "gtdb_species": "s__Pseudoteredinibacter isoporae", "ani": 76.386, "matched_fragments": 53, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Pseudoteredinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.352, "cell_length": 0.117, "doubling_h": null, "growth_tmp": 27.361, "optimum_tmp": 31.312, "optimum_ph": 7.812, "genome_size": 4697041.191, "gc_content": 49.925, "coding_genes": 4336.583, "rRNA16S_genes": 3.0, "tRNA_genes": 49.75, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.888, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Cellvibrionaceae", "g__Cellvibrio", "s__Cellvibrio sp021151825" ], "_genome_taxon": [ "Cellvibrionaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Cellvibrionaceae", "g__Cellvibrio", "s__Cellvibrio sp021151825", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Cellvibrionaceae", "Cellvibrio", "Cellvibrio", "sp021151825" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }