{ "type": "genome", "identifier": "GCA_021202175.1", "organism": "Clostridiales bacterium", "title": "Clostridiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021202175.1", "bioproject": "PRJNA749141", "biosample": "SAMN21364716", "wgs_master": "JAJQDO000000000.1", "refseq_category": "na", "taxid": "1898207", "species_taxid": "1898207", "organism_name": "Clostridiales bacterium", "infraspecific_name": "", "isolate": "MI.10_7", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/14", "asm_name": "ASM2120217v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/202/175/GCA_021202175.1_ASM2120217v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-14", "dateModified": "2021-12-14", "datePublished": "2021-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridiales bacterium" ], "sample_taxid": [ "1898207" ], "sample_host_organism": [ "Phascolarctos cinereus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Magnetic Island, QLD" ], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.23, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3846406", "Number of Sequences": "357", "Longest Sequences (bp)": "61848", "N50 (bp)": "15798", "Gap Ratio (%)": "0.063956", "GCcontent (%)": "44.4", "Number of CDSs": "3414", "Average Protein Length": "289.3", "Coding Ratio (%)": "77.0", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerobutyricum hallii", "strain": "strain=DSM 3353", "accession": "GCA_000173975.1", "taxid": 39488, "species_taxid": 39488, "relation_to_type": "type", "validated": true, "ani": 77.6751, "matched_fragments": 95, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.23, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019113845.1", "gtdb_species": "s__Anaerobutyricum avicola", "ani": 78.3157, "matched_fragments": 195, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900016875.1", "gtdb_species": "s__Anaerobutyricum stercoris", "ani": 78.1, "matched_fragments": 216, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.78", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002161065.1", "gtdb_species": "s__Anaerobutyricum faecale", "ani": 77.9007, "matched_fragments": 228, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000173975.1", "gtdb_species": "s__Anaerobutyricum hallii", "ani": 77.6751, "matched_fragments": 95, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.63", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_900209925.1", "gtdb_species": "s__Anaerobutyricum soehngenii", "ani": 77.6679, "matched_fragments": 93, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.18", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.70", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_017459345.1", "gtdb_species": "s__Anaerobutyricum sp017459345", "ani": 77.4197, "matched_fragments": 84, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017433295.1", "gtdb_species": "s__Anaerobutyricum sp017433295", "ani": 77.3348, "matched_fragments": 83, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019114885.1", "gtdb_species": "s__Anaerobutyricum stercoripullorum", "ani": 77.2013, "matched_fragments": 146, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900754855.1", "gtdb_species": "s__Anaerobutyricum sp900754855", "ani": 76.7738, "matched_fragments": 115, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.23, "cell_length": 0.351, "doubling_h": 0.36, "growth_tmp": 38.862, "optimum_tmp": 40.922, "optimum_ph": 6.957, "genome_size": 3719026.467, "gc_content": 40.959, "coding_genes": 3326.141, "rRNA16S_genes": 7.062, "tRNA_genes": 67.767, "gram_stain": 0.857, "sporulation": 0.615, "motility": 0.653, "range_salinity": 0.19, "facultative_respiration": 0.009, "anaerobic_respiration": 0.968, "aerobic_respiration": 0.021, "mesophilic_range_tmp": 0.809, "thermophilic_range_tmp": 0.154, "psychrophilic_range_tmp": 0.036, "bacillus_cell_shape": 0.897, "coccus_cell_shape": 0.08, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.01, "vibrio_cell_shape": 0.01, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Anaerobutyricum", "s__Anaerobutyricum sp021202175" ], "_genome_taxon": [ "Clostridiales", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Anaerobutyricum", "s__Anaerobutyricum sp021202175", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Anaerobutyricum", "Anaerobutyricum", "sp021202175" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }