{
    "type": "genome",
    "identifier": "GCA_021206435.1",
    "organism": "Parabacteroides chartae",
    "title": "Parabacteroides chartae",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Gujarat Biotechnology Research Centre",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_021206435.1",
        "bioproject": "PRJNA655112",
        "biosample": "SAMN23440168",
        "wgs_master": "JAJOKF000000000.1",
        "refseq_category": "na",
        "taxid": "1037355",
        "species_taxid": "1037355",
        "organism_name": "Parabacteroides chartae",
        "infraspecific_name": "",
        "isolate": "S9C1617",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/14",
        "asm_name": "ASM2120643v1",
        "submitter": "Gujarat Biotechnology Research Centre",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/206/435/GCA_021206435.1_ASM2120643v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-14",
    "dateModified": "2021-12-14",
    "datePublished": "2021-12-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parabacteroides chartae"
        ],
        "sample_taxid": [
            "1037355"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: Jetpur, Gujarat"
        ],
        "sample_host_location_id": [],
        "data_size": "0.344 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 29.17,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1196201",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "42596",
        "N50 (bp)": "16635",
        "Gap Ratio (%)": "0.100318",
        "GCcontent (%)": "45.3",
        "Number of CDSs": "1169",
        "Average Protein Length": "289.9",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "13",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parabacteroides faecis",
                "strain": "strain=DSM 102983",
                "accession": "GCA_014199665.1",
                "taxid": 1217282,
                "species_taxid": 1217282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0175,
                "matched_fragments": 50,
                "total_fragments": 362,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides gordonii",
                "strain": "strain=FDAARGOS_1522",
                "accession": "GCA_020297465.1",
                "taxid": 574930,
                "species_taxid": 574930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7838,
                "matched_fragments": 55,
                "total_fragments": 362,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides gordonii",
                "strain": "strain=MS-1",
                "accession": "GCA_000969825.1",
                "taxid": 574930,
                "species_taxid": 574930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7484,
                "matched_fragments": 58,
                "total_fragments": 362,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides gordonii",
                "strain": "strain=DSM 23371",
                "accession": "GCA_000428565.1",
                "taxid": 574930,
                "species_taxid": 574930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7479,
                "matched_fragments": 58,
                "total_fragments": 362,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 29.17,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013409575.1",
                "gtdb_species": "s__Macellibacteroides fermentans",
                "ani": 97.7683,
                "matched_fragments": 340,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Macellibacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.90",
                "min_intra_species_ani": "95.56",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018054455.1",
                "gtdb_species": "s__Macellibacteroides sp018054455",
                "ani": 79.4127,
                "matched_fragments": 174,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Macellibacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000969825.1",
                "gtdb_species": "s__Parabacteroides gordonii",
                "ani": 76.7108,
                "matched_fragments": 55,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.071,
        "cell_length": 0.29,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.0,
        "optimum_ph": 7.25,
        "genome_size": 3915786.0,
        "gc_content": 44.545,
        "coding_genes": 3853.0,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 82.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Macellibacteroides",
        "s__Macellibacteroides fermentans"
    ],
    "_genome_taxon": [
        "Parabacteroides",
        "chartae",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Macellibacteroides",
        "s__Macellibacteroides fermentans",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Tannerellaceae",
        "Macellibacteroides",
        "Macellibacteroides",
        "fermentans"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}