{ "type": "genome", "identifier": "GCA_021323265.1", "organism": "Pseudoduganella sp.", "title": "Pseudoduganella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021323265.1", "bioproject": "PRJNA725542", "biosample": "SAMN20393830", "wgs_master": "JAJTCO000000000.1", "refseq_category": "na", "taxid": "1880898", "species_taxid": "1880898", "organism_name": "Pseudoduganella sp.", "infraspecific_name": "", "isolate": "C_No_T20_C_bin.1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/12/30", "asm_name": "ASM2132326v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/323/265/GCA_021323265.1_ASM2132326v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-12-30", "dateModified": "2021-12-30", "datePublished": "2021-12-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoduganella sp." ], "sample_taxid": [ "1880898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Colorado, Fort Collins" ], "sample_host_location_id": [], "data_size": "1.290 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 47.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4678854", "Number of Sequences": "149", "Longest Sequences (bp)": "209835", "N50 (bp)": "52046", "Gap Ratio (%)": "0.000171", "GCcontent (%)": "65.5", "Number of CDSs": "4187", "Average Protein Length": "337.1", "Coding Ratio (%)": "90.5", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoduganella guangdongensis", "strain": "strain=DS3", "accession": "GCA_009857475.1", "taxid": 2692179, "species_taxid": 2692179, "relation_to_type": "type", "validated": true, "ani": 87.2372, "matched_fragments": 1159, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella aquatica", "strain": "strain=FT127W", "accession": "GCA_009857595.1", "taxid": 2660641, "species_taxid": 2660641, "relation_to_type": "type", "validated": true, "ani": 82.0774, "matched_fragments": 900, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella violacea", "strain": "strain=CECT 8897", "accession": "GCA_014191875.1", "taxid": 1715466, "species_taxid": 1715466, "relation_to_type": "type", "validated": true, "ani": 81.9469, "matched_fragments": 899, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella namucuonensis", "strain": "strain=CGMCC 1.11014", "accession": "GCA_900116645.1", "taxid": 1035707, "species_taxid": 1035707, "relation_to_type": "type", "validated": true, "ani": 81.8751, "matched_fragments": 943, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella armeniaca", "strain": "strain=ZMN-3", "accession": "GCA_003028855.1", "taxid": 2072590, "species_taxid": 2072590, "relation_to_type": "type", "validated": true, "ani": 81.4992, "matched_fragments": 874, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 81.4741, "matched_fragments": 795, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas fusca", "strain": "strain=FT3S", "accession": "GCA_014042365.1", "taxid": 2758568, "species_taxid": 2758568, "relation_to_type": "type", "validated": true, "ani": 81.2121, "matched_fragments": 798, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella lurida", "strain": "strain=CGMCC 1.10822", "accession": "GCA_007830455.1", "taxid": 1036180, "species_taxid": 1036180, "relation_to_type": "type", "validated": true, "ani": 81.1528, "matched_fragments": 800, "total_fragments": 1476, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas apoptosis", "strain": "strain=LX47W", "accession": "GCA_014042355.1", "taxid": 2758570, "species_taxid": 2758570, "relation_to_type": "type", 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